INFO 2018-12-27 20:02:03,301Z lrauvNc4ToNetcdf.py processResampleNc4File():879 Reading /mbari/LRAUV/whoidhs/missionlogs/2018/20180727_20180727/20180727T183049/201807271831_201807272013.nc4 file... INFO 2018-12-27 20:02:08,795Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen WARNING 2018-12-27 20:02:08,796Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180727_20180727/20180727T183049/201807271831_201807272013.nc4 WARNING 2018-12-27 20:02:08,796Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180727_20180727/20180727T183049/201807271831_201807272013.nc4 WARNING 2018-12-27 20:02:08,796Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180727_20180727/20180727T183049/201807271831_201807272013.nc4 WARNING 2018-12-27 20:02:08,796Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180727_20180727/20180727T183049/201807271831_201807272013.nc4 WARNING 2018-12-27 20:02:08,796Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180727_20180727/20180727T183049/201807271831_201807272013.nc4 WARNING 2018-12-27 20:02:08,796Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180727_20180727/20180727T183049/201807271831_201807272013.nc4 INFO 2018-12-27 20:02:08,798Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping INFO 2018-12-27 20:02:08,799Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output470 empty so skipping INFO 2018-12-27 20:02:08,800Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output650 empty so skipping INFO 2018-12-27 20:02:08,803Z lrauvNc4ToNetcdf.py nudge_coords():544 /mbari/LRAUV/whoidhs/missionlogs/2018/20180727_20180727/20180727T183049/201807271831_201807272013.nc4 INFO 2018-12-27 20:02:09,347Z lrauvNc4ToNetcdf.py nudge_coords():552 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2018-12-27 20:02:09,350Z lrauvNc4ToNetcdf.py nudge_coords():568 - - - 0 0.00 - - WARNING 2018-12-27 20:02:09,351Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.341585159) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:09,354Z lrauvNc4ToNetcdf.py nudge_coords():589 0: 0.342 -0.0000203 0.0000854 160 1.29 7.69 12.30 WARNING 2018-12-27 20:02:09,357Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.332314014) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:09,358Z lrauvNc4ToNetcdf.py nudge_coords():589 1: 0.332 -0.0000082 -0.0000254 23 0.39 -7.49 -11.99 WARNING 2018-12-27 20:02:09,360Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.347738027) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:09,361Z lrauvNc4ToNetcdf.py nudge_coords():589 2: 0.348 -0.0000571 0.0000771 478 3.90 2.29 3.66 WARNING 2018-12-27 20:02:09,364Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.320408106) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:09,365Z lrauvNc4ToNetcdf.py nudge_coords():589 3: 0.320 -0.0012897 0.0003459 2126 14.37 2.79 4.46 WARNING 2018-12-27 20:02:09,368Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.352977037) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:09,369Z lrauvNc4ToNetcdf.py nudge_coords():589 4: 0.353 -0.0004410 0.0004086 1204 8.67 5.46 8.73 WARNING 2018-12-27 20:02:09,372Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.349804878) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:09,373Z lrauvNc4ToNetcdf.py nudge_coords():589 5: 0.350 -0.0002587 0.0006671 2195 15.86 4.87 7.80 WARNING 2018-12-27 20:02:09,376Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.041984081) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:09,376Z lrauvNc4ToNetcdf.py nudge_coords():589 6: 0.042 -0.0015297 -0.0032266 4945 35.15 -10.59 -17.01 WARNING 2018-12-27 20:02:09,380Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.224256038) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:09,380Z lrauvNc4ToNetcdf.py nudge_coords():589 7: 0.224 -0.0015575 -0.0031905 218 1.81 -203.58 -327.13 ERROR 2018-12-27 20:02:09,383Z lrauvNc4ToNetcdf.py processResampleNc4File():1001 index 14065 is out of bounds for axis 1 with size 14065 ERROR 2018-12-27 20:02:09,383Z lrauvNc4ToNetcdf.py processResampleNc4File():1002 Not creating /mbari/LRAUV/whoidhs/missionlogs/2018/20180727_20180727/20180727T183049/201807271831_201807272013_10S_sci.nc INFO 2018-12-27 20:02:09,391Z lrauvNc4ToNetcdf.py processResampleNc4File():879 Reading /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T190059/201807301900_201807302036.nc4 file... INFO 2018-12-27 20:02:14,843Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen WARNING 2018-12-27 20:02:14,843Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T190059/201807301900_201807302036.nc4 WARNING 2018-12-27 20:02:14,843Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T190059/201807301900_201807302036.nc4 WARNING 2018-12-27 20:02:14,844Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T190059/201807301900_201807302036.nc4 WARNING 2018-12-27 20:02:14,844Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T190059/201807301900_201807302036.nc4 WARNING 2018-12-27 20:02:14,844Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T190059/201807301900_201807302036.nc4 WARNING 2018-12-27 20:02:14,844Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T190059/201807301900_201807302036.nc4 INFO 2018-12-27 20:02:14,846Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping INFO 2018-12-27 20:02:14,847Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output470 empty so skipping INFO 2018-12-27 20:02:14,848Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output650 empty so skipping INFO 2018-12-27 20:02:14,850Z lrauvNc4ToNetcdf.py nudge_coords():544 /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T190059/201807301900_201807302036.nc4 INFO 2018-12-27 20:02:15,396Z lrauvNc4ToNetcdf.py nudge_coords():552 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2018-12-27 20:02:15,399Z lrauvNc4ToNetcdf.py nudge_coords():568 - - - 61 0.40 - - WARNING 2018-12-27 20:02:15,400Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.344712972) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:15,403Z lrauvNc4ToNetcdf.py nudge_coords():589 0: 0.345 0.0009962 -0.0001358 729 5.65 -2.79 -4.46 WARNING 2018-12-27 20:02:15,406Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.346818924) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:15,407Z lrauvNc4ToNetcdf.py nudge_coords():589 1: 0.347 0.0002874 -0.0001729 313 2.50 -8.02 -12.80 WARNING 2018-12-27 20:02:15,410Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.338438988) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:15,410Z lrauvNc4ToNetcdf.py nudge_coords():589 2: 0.338 -0.0012082 0.0031815 1923 12.88 28.70 45.76 WARNING 2018-12-27 20:02:15,414Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.357008934) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:15,414Z lrauvNc4ToNetcdf.py nudge_coords():589 3: 0.357 0.0000077 0.0000272 111 0.83 3.80 6.05 WARNING 2018-12-27 20:02:15,417Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.341804982) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:15,418Z lrauvNc4ToNetcdf.py nudge_coords():589 4: 0.342 -0.0025824 0.0032441 2393 16.15 23.31 37.22 WARNING 2018-12-27 20:02:15,421Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.338963032) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:15,422Z lrauvNc4ToNetcdf.py nudge_coords():589 5: 0.339 0.0001729 0.0000115 1255 8.89 0.15 0.24 WARNING 2018-12-27 20:02:15,425Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.338480949) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:15,426Z lrauvNc4ToNetcdf.py nudge_coords():589 6: 0.338 -0.0000039 -0.0000016 25 0.34 -0.56 -0.89 WARNING 2018-12-27 20:02:15,429Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (3.200735092) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:15,430Z lrauvNc4ToNetcdf.py nudge_coords():589 7: 3.201 0.0012732 0.0097411 5389 36.03 31.58 50.10 INFO 2018-12-27 20:02:15,433Z lrauvNc4ToNetcdf.py nudge_coords():613 9: - - - 1646 12.15 - - INFO 2018-12-27 20:02:15,433Z lrauvNc4ToNetcdf.py nudge_coords():617 Points in final series = 13845 INFO 2018-12-27 20:02:15,465Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():490 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20180730T180059/20180730T213655/data.csv INFO 2018-12-27 20:02:15,505Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():513 Found 0 position values from the Tracking database INFO 2018-12-27 20:02:15,508Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 ['oxygen', 'latitude', 'longitude', 'depth', 'time'] INFO 2018-12-27 20:02:15,610Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Wrote /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T190059/201807301900_201807302036_10S_sci.nc INFO 2018-12-27 20:02:15,617Z lrauvNc4ToNetcdf.py processResampleNc4File():879 Reading /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T203657/201807302037_201807302150.nc4 file... INFO 2018-12-27 20:02:20,720Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen WARNING 2018-12-27 20:02:20,721Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T203657/201807302037_201807302150.nc4 WARNING 2018-12-27 20:02:20,721Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T203657/201807302037_201807302150.nc4 WARNING 2018-12-27 20:02:20,721Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T203657/201807302037_201807302150.nc4 WARNING 2018-12-27 20:02:20,721Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T203657/201807302037_201807302150.nc4 WARNING 2018-12-27 20:02:20,721Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T203657/201807302037_201807302150.nc4 WARNING 2018-12-27 20:02:20,722Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T203657/201807302037_201807302150.nc4 INFO 2018-12-27 20:02:20,723Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping INFO 2018-12-27 20:02:20,724Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output470 empty so skipping INFO 2018-12-27 20:02:20,726Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output650 empty so skipping INFO 2018-12-27 20:02:20,727Z lrauvNc4ToNetcdf.py nudge_coords():544 /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T203657/201807302037_201807302150.nc4 INFO 2018-12-27 20:02:21,243Z lrauvNc4ToNetcdf.py nudge_coords():552 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2018-12-27 20:02:21,244Z lrauvNc4ToNetcdf.py nudge_coords():568 - - - 0 0.00 - - WARNING 2018-12-27 20:02:21,246Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.334468126) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:21,247Z lrauvNc4ToNetcdf.py nudge_coords():589 0: 0.334 -0.0007691 -0.0039913 3963 28.51 -16.25 -25.94 WARNING 2018-12-27 20:02:21,250Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.345700979) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:21,251Z lrauvNc4ToNetcdf.py nudge_coords():589 1: 0.346 0.0004239 -0.0011983 1189 8.64 -16.08 -25.69 WARNING 2018-12-27 20:02:21,254Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.338478089) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:21,255Z lrauvNc4ToNetcdf.py nudge_coords():589 2: 0.338 0.0035710 -0.0031942 3966 27.95 -13.22 -21.18 INFO 2018-12-27 20:02:21,258Z lrauvNc4ToNetcdf.py nudge_coords():613 4: - - - 188 1.40 - - INFO 2018-12-27 20:02:21,258Z lrauvNc4ToNetcdf.py nudge_coords():617 Points in final series = 9306 INFO 2018-12-27 20:02:21,298Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():490 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20180730T193707/20180730T225057/data.csv INFO 2018-12-27 20:02:21,348Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():513 Found 0 position values from the Tracking database INFO 2018-12-27 20:02:21,351Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 ['oxygen', 'latitude', 'longitude', 'depth', 'time'] INFO 2018-12-27 20:02:21,392Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Wrote /mbari/LRAUV/whoidhs/missionlogs/2018/20180730_20180730/20180730T203657/201807302037_201807302150_10S_sci.nc INFO 2018-12-27 20:02:21,419Z lrauvNc4ToNetcdf.py processResampleNc4File():879 Reading /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4 file... INFO 2018-12-27 20:02:28,485Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen WARNING 2018-12-27 20:02:28,485Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4 WARNING 2018-12-27 20:02:28,486Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4 WARNING 2018-12-27 20:02:28,486Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4 WARNING 2018-12-27 20:02:28,486Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4 WARNING 2018-12-27 20:02:28,486Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4 WARNING 2018-12-27 20:02:28,486Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4 INFO 2018-12-27 20:02:28,488Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping INFO 2018-12-27 20:02:28,489Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output470 empty so skipping INFO 2018-12-27 20:02:28,490Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output650 empty so skipping INFO 2018-12-27 20:02:28,492Z lrauvNc4ToNetcdf.py nudge_coords():544 /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4 INFO 2018-12-27 20:02:29,171Z lrauvNc4ToNetcdf.py nudge_coords():552 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2018-12-27 20:02:29,173Z lrauvNc4ToNetcdf.py nudge_coords():568 - - - 85 0.56 - - WARNING 2018-12-27 20:02:29,174Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.351963997) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:29,177Z lrauvNc4ToNetcdf.py nudge_coords():589 0: 0.352 0.0002540 0.0013094 1270 9.41 16.24 25.79 WARNING 2018-12-27 20:02:29,180Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.348714113) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:29,181Z lrauvNc4ToNetcdf.py nudge_coords():589 1: 0.349 -0.0000341 0.0005612 374 2.93 22.35 35.49 WARNING 2018-12-27 20:02:29,184Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.35802102) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:29,185Z lrauvNc4ToNetcdf.py nudge_coords():589 2: 0.358 0.0007897 0.0003787 4114 27.66 1.60 2.54 WARNING 2018-12-27 20:02:29,188Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.342586994) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:29,189Z lrauvNc4ToNetcdf.py nudge_coords():589 3: 0.343 0.0000951 0.0001155 19 0.34 39.42 62.57 WARNING 2018-12-27 20:02:29,192Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.334550858) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:29,192Z lrauvNc4ToNetcdf.py nudge_coords():589 4: 0.335 0.0000555 0.0000247 31 0.27 10.85 17.22 WARNING 2018-12-27 20:02:29,195Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.332415819) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:29,196Z lrauvNc4ToNetcdf.py nudge_coords():589 5: 0.332 -0.0002586 0.0005149 841 6.23 9.66 15.32 WARNING 2018-12-27 20:02:29,199Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.330349207) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:29,200Z lrauvNc4ToNetcdf.py nudge_coords():589 6: 0.330 -0.0001154 0.0001642 168 1.53 12.57 19.93 WARNING 2018-12-27 20:02:29,203Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (3.958072901) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:29,204Z lrauvNc4ToNetcdf.py nudge_coords():589 7: 3.958 0.0000013 0.0000060 1 0.00 inf inf WARNING 2018-12-27 20:02:29,207Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.338693142) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:29,208Z lrauvNc4ToNetcdf.py nudge_coords():589 8: 0.339 -0.0000213 0.0000039 22 0.26 1.74 2.76 WARNING 2018-12-27 20:02:29,211Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.346779108) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:29,211Z lrauvNc4ToNetcdf.py nudge_coords():589 9: 0.347 -0.0002560 0.0003097 478 3.78 9.59 15.20 WARNING 2018-12-27 20:02:29,214Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.367403031) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:29,215Z lrauvNc4ToNetcdf.py nudge_coords():589 10: 0.367 -0.0000633 0.0003381 358 2.90 13.61 21.57 WARNING 2018-12-27 20:02:29,218Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.346779108) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:29,219Z lrauvNc4ToNetcdf.py nudge_coords():589 11: 0.347 0.0046165 -0.0000412 7878 52.79 -0.09 -0.14 INFO 2018-12-27 20:02:29,223Z lrauvNc4ToNetcdf.py nudge_coords():613 13: - - - 1613 11.66 - - INFO 2018-12-27 20:02:29,223Z lrauvNc4ToNetcdf.py nudge_coords():617 Points in final series = 17167 INFO 2018-12-27 20:02:29,270Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():490 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20180731T172828/20180731T212854/data.csv INFO 2018-12-27 20:02:29,297Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():513 Found 0 position values from the Tracking database INFO 2018-12-27 20:02:29,301Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 ['oxygen', 'latitude', 'longitude', 'depth', 'time'] INFO 2018-12-27 20:02:29,353Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Wrote /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028_10S_sci.nc INFO 2018-12-27 20:02:29,360Z lrauvNc4ToNetcdf.py processResampleNc4File():879 Reading /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4 file... INFO 2018-12-27 20:02:30,990Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen WARNING 2018-12-27 20:02:30,990Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4 WARNING 2018-12-27 20:02:30,991Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4 WARNING 2018-12-27 20:02:30,991Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4 WARNING 2018-12-27 20:02:30,991Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4 WARNING 2018-12-27 20:02:30,991Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4 WARNING 2018-12-27 20:02:30,991Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4 INFO 2018-12-27 20:02:30,992Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping INFO 2018-12-27 20:02:30,994Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output470 empty so skipping INFO 2018-12-27 20:02:30,995Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output650 empty so skipping INFO 2018-12-27 20:02:30,996Z lrauvNc4ToNetcdf.py nudge_coords():544 /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4 INFO 2018-12-27 20:02:31,127Z lrauvNc4ToNetcdf.py nudge_coords():552 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) ERROR 2018-12-27 20:02:31,127Z lrauvNc4ToNetcdf.py processResampleNc4File():1001 index 0 is out of bounds for axis 0 with size 0 ERROR 2018-12-27 20:02:31,127Z lrauvNc4ToNetcdf.py processResampleNc4File():1002 Not creating /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045_10S_sci.nc INFO 2018-12-27 20:02:31,133Z lrauvNc4ToNetcdf.py processResampleNc4File():879 Reading /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4 file... INFO 2018-12-27 20:02:42,339Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen WARNING 2018-12-27 20:02:42,340Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4 WARNING 2018-12-27 20:02:42,340Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4 WARNING 2018-12-27 20:02:42,340Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4 WARNING 2018-12-27 20:02:42,340Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4 WARNING 2018-12-27 20:02:42,341Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4 WARNING 2018-12-27 20:02:42,341Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4 INFO 2018-12-27 20:02:42,342Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping INFO 2018-12-27 20:02:42,344Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output470 empty so skipping INFO 2018-12-27 20:02:42,345Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output650 empty so skipping INFO 2018-12-27 20:02:42,347Z lrauvNc4ToNetcdf.py nudge_coords():544 /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4 INFO 2018-12-27 20:02:43,336Z lrauvNc4ToNetcdf.py nudge_coords():552 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2018-12-27 20:02:43,338Z lrauvNc4ToNetcdf.py nudge_coords():568 - - - 0 0.00 - - WARNING 2018-12-27 20:02:43,339Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.346764087) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:43,344Z lrauvNc4ToNetcdf.py nudge_coords():589 0: 0.347 0.0000957 0.0006125 685 5.02 14.33 22.61 WARNING 2018-12-27 20:02:43,347Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.325279951) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:43,348Z lrauvNc4ToNetcdf.py nudge_coords():589 1: 0.325 -0.0000115 0.0002330 299 2.17 12.60 19.88 WARNING 2018-12-27 20:02:43,351Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.328751087) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:43,352Z lrauvNc4ToNetcdf.py nudge_coords():589 2: 0.329 -0.0047481 0.0059787 6190 41.27 17.00 26.84 WARNING 2018-12-27 20:02:43,355Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.340529918) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:43,356Z lrauvNc4ToNetcdf.py nudge_coords():589 3: 0.341 0.0009831 -0.0008212 1959 13.40 -7.19 -11.36 WARNING 2018-12-27 20:02:43,360Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.382608175) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:43,361Z lrauvNc4ToNetcdf.py nudge_coords():589 4: 0.383 0.0002576 -0.0001632 493 3.44 -5.57 -8.80 WARNING 2018-12-27 20:02:43,364Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.344800949) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:43,365Z lrauvNc4ToNetcdf.py nudge_coords():589 5: 0.345 0.0001256 -0.0005884 2726 18.18 -3.79 -6.00 WARNING 2018-12-27 20:02:43,368Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.305797815) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:43,369Z lrauvNc4ToNetcdf.py nudge_coords():589 6: 0.306 0.0006715 -0.0004491 1468 9.96 -5.28 -8.35 WARNING 2018-12-27 20:02:43,372Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.343086958) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:43,373Z lrauvNc4ToNetcdf.py nudge_coords():589 7: 0.343 0.0007161 -0.0005350 1714 11.57 -5.42 -8.57 WARNING 2018-12-27 20:02:43,376Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.36212492) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:43,377Z lrauvNc4ToNetcdf.py nudge_coords():589 8: 0.362 0.0008901 -0.0006682 1669 11.24 -6.96 -11.01 WARNING 2018-12-27 20:02:43,381Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.352808952) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:43,382Z lrauvNc4ToNetcdf.py nudge_coords():589 9: 0.353 0.0000657 -0.0000498 116 0.83 -6.99 -11.06 WARNING 2018-12-27 20:02:43,385Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.338606834) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:43,386Z lrauvNc4ToNetcdf.py nudge_coords():589 10: 0.339 0.0016548 -0.0011998 2463 17.19 -8.17 -12.93 WARNING 2018-12-27 20:02:43,389Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.344712019) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:43,390Z lrauvNc4ToNetcdf.py nudge_coords():589 11: 0.345 -0.0008662 -0.0051486 7029 47.12 -12.72 -20.25 WARNING 2018-12-27 20:02:43,394Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.358021021) < max_sec_diff_at_end (10) INFO 2018-12-27 20:02:43,395Z lrauvNc4ToNetcdf.py nudge_coords():589 12: 0.358 0.0004735 -0.0001968 1685 11.49 -1.99 -3.17 INFO 2018-12-27 20:02:43,398Z lrauvNc4ToNetcdf.py nudge_coords():613 14: - - - 1461 9.80 - - INFO 2018-12-27 20:02:43,398Z lrauvNc4ToNetcdf.py nudge_coords():617 Points in final series = 29957 INFO 2018-12-27 20:02:43,444Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():490 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20180731T194639/20180801T011420/data.csv INFO 2018-12-27 20:02:43,472Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():513 Found 0 position values from the Tracking database INFO 2018-12-27 20:02:43,477Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 ['oxygen', 'latitude', 'longitude', 'depth', 'time'] INFO 2018-12-27 20:02:43,552Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Wrote /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014_10S_sci.nc