INFO 2018-12-27 20:04:33,225Z lrauvNc4ToNetcdf.py processResampleNc4File():879 Reading /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4 file...
INFO 2018-12-27 20:04:39,999Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2018-12-27 20:04:40,351Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2018-12-27 20:04:40,705Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2018-12-27 20:04:41,058Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
INFO 2018-12-27 20:04:41,061Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingSpeedCalculator parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator
INFO 2018-12-27 20:04:41,415Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2018-12-27 20:04:41,771Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2018-12-27 20:04:42,124Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2018-12-27 20:04:42,230Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
WARNING 2018-12-27 20:04:42,230Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4
WARNING 2018-12-27 20:04:42,230Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4
WARNING 2018-12-27 20:04:42,230Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4
WARNING 2018-12-27 20:04:42,230Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4
WARNING 2018-12-27 20:04:42,230Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4
WARNING 2018-12-27 20:04:42,230Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4
INFO 2018-12-27 20:04:42,232Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2018-12-27 20:04:42,233Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output470 empty so skipping
INFO 2018-12-27 20:04:42,234Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output650 empty so skipping
INFO 2018-12-27 20:04:42,252Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable platform_battery_charge empty so skipping
INFO 2018-12-27 20:04:42,269Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable platform_battery_voltage empty so skipping
INFO 2018-12-27 20:04:42,273Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2018-12-27 20:04:42,277Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2018-12-27 20:04:42,281Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2018-12-27 20:04:42,281Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4
INFO 2018-12-27 20:04:42,325Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2018-12-27 20:04:42,358Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2018-12-27 20:04:42,367Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2018-12-27 20:04:42,398Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2018-12-27 20:04:42,570Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2018-12-27 20:04:42,953Z lrauvNc4ToNetcdf.py createNav():449 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2018-12-27 20:04:43,335Z lrauvNc4ToNetcdf.py createNav():449 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2018-12-27 20:04:43,713Z lrauvNc4ToNetcdf.py createNav():449 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2018-12-27 20:04:43,714Z lrauvNc4ToNetcdf.py nudge_coords():544 /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028.nc4
INFO 2018-12-27 20:04:44,377Z lrauvNc4ToNetcdf.py nudge_coords():552 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2018-12-27 20:04:44,378Z lrauvNc4ToNetcdf.py nudge_coords():568                  -            -            -        85    0.56              -              -
WARNING 2018-12-27 20:04:44,380Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.351963997) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:04:44,382Z lrauvNc4ToNetcdf.py nudge_coords():589    0:        0.352    0.0002540    0.0013094      1270    9.41          16.24          25.79
WARNING 2018-12-27 20:04:44,385Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.348714113) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:04:44,386Z lrauvNc4ToNetcdf.py nudge_coords():589    1:        0.349   -0.0000341    0.0005612       374    2.93          22.35          35.49
WARNING 2018-12-27 20:04:44,389Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.35802102) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:04:44,390Z lrauvNc4ToNetcdf.py nudge_coords():589    2:        0.358    0.0007897    0.0003787      4114   27.66           1.60           2.54
WARNING 2018-12-27 20:04:44,393Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.342586994) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:04:44,394Z lrauvNc4ToNetcdf.py nudge_coords():589    3:        0.343    0.0000951    0.0001155        19    0.34          39.42          62.57
WARNING 2018-12-27 20:04:44,397Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.334550858) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:04:44,398Z lrauvNc4ToNetcdf.py nudge_coords():589    4:        0.335    0.0000555    0.0000247        31    0.27          10.85          17.22
WARNING 2018-12-27 20:04:44,401Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.332415819) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:04:44,401Z lrauvNc4ToNetcdf.py nudge_coords():589    5:        0.332   -0.0002586    0.0005149       841    6.23           9.66          15.32
WARNING 2018-12-27 20:04:44,405Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.330349207) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:04:44,405Z lrauvNc4ToNetcdf.py nudge_coords():589    6:        0.330   -0.0001154    0.0001642       168    1.53          12.57          19.93
WARNING 2018-12-27 20:04:44,408Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (3.958072901) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:04:44,409Z lrauvNc4ToNetcdf.py nudge_coords():589    7:        3.958    0.0000013    0.0000060         1    0.00            inf            inf
WARNING 2018-12-27 20:04:44,412Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.338693142) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:04:44,413Z lrauvNc4ToNetcdf.py nudge_coords():589    8:        0.339   -0.0000213    0.0000039        22    0.26           1.74           2.76
WARNING 2018-12-27 20:04:44,416Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.346779108) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:04:44,417Z lrauvNc4ToNetcdf.py nudge_coords():589    9:        0.347   -0.0002560    0.0003097       478    3.78           9.59          15.20
WARNING 2018-12-27 20:04:44,420Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.367403031) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:04:44,421Z lrauvNc4ToNetcdf.py nudge_coords():589   10:        0.367   -0.0000633    0.0003381       358    2.90          13.61          21.57
WARNING 2018-12-27 20:04:44,423Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.346779108) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:04:44,424Z lrauvNc4ToNetcdf.py nudge_coords():589   11:        0.347    0.0046165   -0.0000412      7878   52.79          -0.09          -0.14
INFO 2018-12-27 20:04:44,428Z lrauvNc4ToNetcdf.py nudge_coords():613   13:            -            -            -      1613   11.66              -              -
INFO 2018-12-27 20:04:44,428Z lrauvNc4ToNetcdf.py nudge_coords():617 Points in final series = 17167
INFO 2018-12-27 20:04:44,474Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():490 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20180731T172828/20180731T212854/data.csv
INFO 2018-12-27 20:04:44,501Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():513 Found 0 position values from the Tracking database
INFO 2018-12-27 20:04:44,505Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 ['fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'oxygen', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2018-12-27 20:04:44,680Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Wrote /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T182827/201807311828_201807312028_2S_scieng.nc