INFO 2018-12-27 20:02:29,360Z lrauvNc4ToNetcdf.py processResampleNc4File():879 Reading /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4 file...
INFO 2018-12-27 20:02:30,990Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
WARNING 2018-12-27 20:02:30,990Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
WARNING 2018-12-27 20:02:30,991Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
WARNING 2018-12-27 20:02:30,991Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
WARNING 2018-12-27 20:02:30,991Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
WARNING 2018-12-27 20:02:30,991Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
WARNING 2018-12-27 20:02:30,991Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
INFO 2018-12-27 20:02:30,992Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2018-12-27 20:02:30,994Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output470 empty so skipping
INFO 2018-12-27 20:02:30,995Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output650 empty so skipping
INFO 2018-12-27 20:02:30,996Z lrauvNc4ToNetcdf.py nudge_coords():544 /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
INFO 2018-12-27 20:02:31,127Z lrauvNc4ToNetcdf.py nudge_coords():552 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
ERROR 2018-12-27 20:02:31,127Z lrauvNc4ToNetcdf.py processResampleNc4File():1001 index 0 is out of bounds for axis 0 with size 0
ERROR 2018-12-27 20:02:31,127Z lrauvNc4ToNetcdf.py processResampleNc4File():1002 Not creating /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045_10S_sci.nc
INFO 2018-12-27 20:02:31,133Z lrauvNc4ToNetcdf.py processResampleNc4File():879 Reading /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4 file...
INFO 2018-12-27 20:02:42,339Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
WARNING 2018-12-27 20:02:42,340Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
WARNING 2018-12-27 20:02:42,340Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
WARNING 2018-12-27 20:02:42,340Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
WARNING 2018-12-27 20:02:42,340Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
WARNING 2018-12-27 20:02:42,341Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
WARNING 2018-12-27 20:02:42,341Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
INFO 2018-12-27 20:02:42,342Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2018-12-27 20:02:42,344Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output470 empty so skipping
INFO 2018-12-27 20:02:42,345Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output650 empty so skipping
INFO 2018-12-27 20:02:42,347Z lrauvNc4ToNetcdf.py nudge_coords():544 /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
INFO 2018-12-27 20:02:43,336Z lrauvNc4ToNetcdf.py nudge_coords():552 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2018-12-27 20:02:43,338Z lrauvNc4ToNetcdf.py nudge_coords():568                  -            -            -         0    0.00              -              -
WARNING 2018-12-27 20:02:43,339Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.346764087) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:02:43,344Z lrauvNc4ToNetcdf.py nudge_coords():589    0:        0.347    0.0000957    0.0006125       685    5.02          14.33          22.61
WARNING 2018-12-27 20:02:43,347Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.325279951) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:02:43,348Z lrauvNc4ToNetcdf.py nudge_coords():589    1:        0.325   -0.0000115    0.0002330       299    2.17          12.60          19.88
WARNING 2018-12-27 20:02:43,351Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.328751087) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:02:43,352Z lrauvNc4ToNetcdf.py nudge_coords():589    2:        0.329   -0.0047481    0.0059787      6190   41.27          17.00          26.84
WARNING 2018-12-27 20:02:43,355Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.340529918) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:02:43,356Z lrauvNc4ToNetcdf.py nudge_coords():589    3:        0.341    0.0009831   -0.0008212      1959   13.40          -7.19         -11.36
WARNING 2018-12-27 20:02:43,360Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.382608175) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:02:43,361Z lrauvNc4ToNetcdf.py nudge_coords():589    4:        0.383    0.0002576   -0.0001632       493    3.44          -5.57          -8.80
WARNING 2018-12-27 20:02:43,364Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.344800949) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:02:43,365Z lrauvNc4ToNetcdf.py nudge_coords():589    5:        0.345    0.0001256   -0.0005884      2726   18.18          -3.79          -6.00
WARNING 2018-12-27 20:02:43,368Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.305797815) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:02:43,369Z lrauvNc4ToNetcdf.py nudge_coords():589    6:        0.306    0.0006715   -0.0004491      1468    9.96          -5.28          -8.35
WARNING 2018-12-27 20:02:43,372Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.343086958) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:02:43,373Z lrauvNc4ToNetcdf.py nudge_coords():589    7:        0.343    0.0007161   -0.0005350      1714   11.57          -5.42          -8.57
WARNING 2018-12-27 20:02:43,376Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.36212492) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:02:43,377Z lrauvNc4ToNetcdf.py nudge_coords():589    8:        0.362    0.0008901   -0.0006682      1669   11.24          -6.96         -11.01
WARNING 2018-12-27 20:02:43,381Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.352808952) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:02:43,382Z lrauvNc4ToNetcdf.py nudge_coords():589    9:        0.353    0.0000657   -0.0000498       116    0.83          -6.99         -11.06
WARNING 2018-12-27 20:02:43,385Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.338606834) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:02:43,386Z lrauvNc4ToNetcdf.py nudge_coords():589   10:        0.339    0.0016548   -0.0011998      2463   17.19          -8.17         -12.93
WARNING 2018-12-27 20:02:43,389Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.344712019) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:02:43,390Z lrauvNc4ToNetcdf.py nudge_coords():589   11:        0.345   -0.0008662   -0.0051486      7029   47.12         -12.72         -20.25
WARNING 2018-12-27 20:02:43,394Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.358021021) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:02:43,395Z lrauvNc4ToNetcdf.py nudge_coords():589   12:        0.358    0.0004735   -0.0001968      1685   11.49          -1.99          -3.17
INFO 2018-12-27 20:02:43,398Z lrauvNc4ToNetcdf.py nudge_coords():613   14:            -            -            -      1461    9.80              -              -
INFO 2018-12-27 20:02:43,398Z lrauvNc4ToNetcdf.py nudge_coords():617 Points in final series = 29957
INFO 2018-12-27 20:02:43,444Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():490 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20180731T194639/20180801T011420/data.csv
INFO 2018-12-27 20:02:43,472Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():513 Found 0 position values from the Tracking database
INFO 2018-12-27 20:02:43,477Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 ['oxygen', 'latitude', 'longitude', 'depth', 'time']
INFO 2018-12-27 20:02:43,552Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Wrote /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014_10S_sci.nc