INFO 2018-12-27 20:04:44,685Z lrauvNc4ToNetcdf.py processResampleNc4File():879 Reading /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4 file...
INFO 2018-12-27 20:04:46,222Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2018-12-27 20:04:46,223Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable longitude empty so skipping
INFO 2018-12-27 20:04:46,224Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable latitude empty so skipping
INFO 2018-12-27 20:04:46,226Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable depth empty so skipping
INFO 2018-12-27 20:04:46,227Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2018-12-27 20:04:46,228Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable longitude empty so skipping
INFO 2018-12-27 20:04:46,229Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable latitude empty so skipping
INFO 2018-12-27 20:04:46,230Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable depth empty so skipping
INFO 2018-12-27 20:04:46,244Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
WARNING 2018-12-27 20:04:46,244Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
WARNING 2018-12-27 20:04:46,244Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
WARNING 2018-12-27 20:04:46,244Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
WARNING 2018-12-27 20:04:46,244Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
WARNING 2018-12-27 20:04:46,244Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
WARNING 2018-12-27 20:04:46,245Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
INFO 2018-12-27 20:04:46,246Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2018-12-27 20:04:46,247Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output470 empty so skipping
INFO 2018-12-27 20:04:46,248Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output650 empty so skipping
INFO 2018-12-27 20:04:46,284Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2018-12-27 20:04:46,319Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2018-12-27 20:04:46,320Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable time_fix empty so skipping
INFO 2018-12-27 20:04:46,322Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable latitude_fix empty so skipping
INFO 2018-12-27 20:04:46,323Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable longitude_fix empty so skipping
WARNING 2018-12-27 20:04:46,323Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
INFO 2018-12-27 20:04:46,327Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2018-12-27 20:04:46,331Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2018-12-27 20:04:46,336Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2018-12-27 20:04:46,341Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2018-12-27 20:04:46,344Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2018-12-27 20:04:46,434Z lrauvNc4ToNetcdf.py createNav():449 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2018-12-27 20:04:46,523Z lrauvNc4ToNetcdf.py createNav():449 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2018-12-27 20:04:46,611Z lrauvNc4ToNetcdf.py createNav():449 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2018-12-27 20:04:46,612Z lrauvNc4ToNetcdf.py nudge_coords():544 /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045.nc4
INFO 2018-12-27 20:04:46,744Z lrauvNc4ToNetcdf.py nudge_coords():552 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
ERROR 2018-12-27 20:04:46,745Z lrauvNc4ToNetcdf.py processResampleNc4File():1001 index 0 is out of bounds for axis 0 with size 0
ERROR 2018-12-27 20:04:46,745Z lrauvNc4ToNetcdf.py processResampleNc4File():1002 Not creating /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T202921/201807312029_201807312045_2S_scieng.nc
INFO 2018-12-27 20:04:46,749Z lrauvNc4ToNetcdf.py processResampleNc4File():879 Reading /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4 file...
INFO 2018-12-27 20:04:57,598Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2018-12-27 20:04:58,198Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2018-12-27 20:04:58,802Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2018-12-27 20:04:59,397Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
INFO 2018-12-27 20:04:59,401Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingSpeedCalculator parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator
INFO 2018-12-27 20:04:59,998Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2018-12-27 20:05:00,594Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2018-12-27 20:05:01,190Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2018-12-27 20:05:01,306Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
WARNING 2018-12-27 20:05:01,306Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
WARNING 2018-12-27 20:05:01,307Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
WARNING 2018-12-27 20:05:01,307Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
WARNING 2018-12-27 20:05:01,307Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
WARNING 2018-12-27 20:05:01,307Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
WARNING 2018-12-27 20:05:01,307Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
INFO 2018-12-27 20:05:01,309Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2018-12-27 20:05:01,310Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output470 empty so skipping
INFO 2018-12-27 20:05:01,311Z lrauvNc4ToNetcdf.py processResampleNc4File():922 Variable Output650 empty so skipping
INFO 2018-12-27 20:05:01,348Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2018-12-27 20:05:01,384Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2018-12-27 20:05:01,388Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2018-12-27 20:05:01,392Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2018-12-27 20:05:01,396Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2018-12-27 20:05:01,396Z lrauvNc4ToNetcdf.py processResampleNc4File():961 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
INFO 2018-12-27 20:05:01,438Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2018-12-27 20:05:01,486Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2018-12-27 20:05:01,500Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2018-12-27 20:05:01,534Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2018-12-27 20:05:01,802Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2018-12-27 20:05:02,453Z lrauvNc4ToNetcdf.py createNav():449 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2018-12-27 20:05:03,092Z lrauvNc4ToNetcdf.py createNav():449 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2018-12-27 20:05:03,733Z lrauvNc4ToNetcdf.py createNav():449 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2018-12-27 20:05:03,734Z lrauvNc4ToNetcdf.py nudge_coords():544 /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014.nc4
INFO 2018-12-27 20:05:04,680Z lrauvNc4ToNetcdf.py nudge_coords():552 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2018-12-27 20:05:04,682Z lrauvNc4ToNetcdf.py nudge_coords():568                  -            -            -         0    0.00              -              -
WARNING 2018-12-27 20:05:04,683Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.346764087) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:05:04,687Z lrauvNc4ToNetcdf.py nudge_coords():589    0:        0.347    0.0000957    0.0006125       685    5.02          14.33          22.61
WARNING 2018-12-27 20:05:04,690Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.325279951) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:05:04,691Z lrauvNc4ToNetcdf.py nudge_coords():589    1:        0.325   -0.0000115    0.0002330       299    2.17          12.60          19.88
WARNING 2018-12-27 20:05:04,694Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.328751087) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:05:04,695Z lrauvNc4ToNetcdf.py nudge_coords():589    2:        0.329   -0.0047481    0.0059787      6190   41.27          17.00          26.84
WARNING 2018-12-27 20:05:04,698Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.340529918) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:05:04,699Z lrauvNc4ToNetcdf.py nudge_coords():589    3:        0.341    0.0009831   -0.0008212      1959   13.40          -7.19         -11.36
WARNING 2018-12-27 20:05:04,702Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.382608175) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:05:04,703Z lrauvNc4ToNetcdf.py nudge_coords():589    4:        0.383    0.0002576   -0.0001632       493    3.44          -5.57          -8.80
WARNING 2018-12-27 20:05:04,706Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.344800949) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:05:04,707Z lrauvNc4ToNetcdf.py nudge_coords():589    5:        0.345    0.0001256   -0.0005884      2726   18.18          -3.79          -6.00
WARNING 2018-12-27 20:05:04,710Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.305797815) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:05:04,711Z lrauvNc4ToNetcdf.py nudge_coords():589    6:        0.306    0.0006715   -0.0004491      1468    9.96          -5.28          -8.35
WARNING 2018-12-27 20:05:04,714Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.343086958) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:05:04,716Z lrauvNc4ToNetcdf.py nudge_coords():589    7:        0.343    0.0007161   -0.0005350      1714   11.57          -5.42          -8.57
WARNING 2018-12-27 20:05:04,719Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.36212492) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:05:04,720Z lrauvNc4ToNetcdf.py nudge_coords():589    8:        0.362    0.0008901   -0.0006682      1669   11.24          -6.96         -11.01
WARNING 2018-12-27 20:05:04,723Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.352808952) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:05:04,724Z lrauvNc4ToNetcdf.py nudge_coords():589    9:        0.353    0.0000657   -0.0000498       116    0.83          -6.99         -11.06
WARNING 2018-12-27 20:05:04,727Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.338606834) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:05:04,728Z lrauvNc4ToNetcdf.py nudge_coords():589   10:        0.339    0.0016548   -0.0011998      2463   17.19          -8.17         -12.93
WARNING 2018-12-27 20:05:04,731Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.344712019) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:05:04,732Z lrauvNc4ToNetcdf.py nudge_coords():589   11:        0.345   -0.0008662   -0.0051486      7029   47.12         -12.72         -20.25
WARNING 2018-12-27 20:05:04,735Z lrauvNc4ToNetcdf.py nudge_coords():577 end_sec_diff (0.358021021) < max_sec_diff_at_end (10)
INFO 2018-12-27 20:05:04,736Z lrauvNc4ToNetcdf.py nudge_coords():589   12:        0.358    0.0004735   -0.0001968      1685   11.49          -1.99          -3.17
INFO 2018-12-27 20:05:04,740Z lrauvNc4ToNetcdf.py nudge_coords():613   14:            -            -            -      1461    9.80              -              -
INFO 2018-12-27 20:05:04,740Z lrauvNc4ToNetcdf.py nudge_coords():617 Points in final series = 29957
INFO 2018-12-27 20:05:04,786Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():490 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20180731T194639/20180801T011420/data.csv
INFO 2018-12-27 20:05:04,808Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():513 Found 0 position values from the Tracking database
INFO 2018-12-27 20:05:04,813Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 ['fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'oxygen', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2018-12-27 20:05:05,049Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Wrote /mbari/LRAUV/whoidhs/missionlogs/2018/20180731_20180801/20180731T204619/201807312046_201808010014_2S_scieng.nc