INFO 2019-06-11 02:37:26,191Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4 file...
INFO 2019-06-11 02:37:26,191Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201904032235_201904040107.nc4
INFO 2019-06-11 02:37:27,067Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
INFO 2019-06-11 02:37:34,347Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes
WARNING 2019-06-11 02:37:34,363Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
INFO 2019-06-11 02:37:34,467Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-06-11 02:37:35,168Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity
INFO 2019-06-11 02:37:35,870Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature
WARNING 2019-06-11 02:37:35,870Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
WARNING 2019-06-11 02:37:35,870Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
INFO 2019-06-11 02:37:35,908Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-11 02:37:35,908Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
INFO 2019-06-11 02:37:35,923Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-11 02:37:35,928Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-11 02:37:35,932Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-11 02:37:35,936Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-11 02:37:35,936Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
INFO 2019-06-11 02:37:35,941Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-11 02:37:36,151Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-11 02:37:36,151Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
WARNING 2019-06-11 02:37:36,151Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
WARNING 2019-06-11 02:37:36,151Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
INFO 2019-06-11 02:37:36,294Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-11 02:37:36,438Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-11 02:37:36,439Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-11 02:37:36,583Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-11 02:37:36,726Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-11 02:37:36,730Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:37:37,198Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:37:37,665Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:37:38,134Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-11 02:37:38,135Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
WARNING 2019-06-11 02:37:38,135Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
WARNING 2019-06-11 02:37:38,135Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
WARNING 2019-06-11 02:37:38,135Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
INFO 2019-06-11 02:37:38,142Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-06-11 02:37:38,147Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-06-11 02:37:38,147Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
INFO 2019-06-11 02:37:38,605Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:37:39,069Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:37:39,525Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:37:39,526Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107.nc4
INFO 2019-06-11 02:37:40,196Z lrauvNc4ToNetcdf.py nudge_coords():593 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-11 02:37:40,197Z lrauvNc4ToNetcdf.py nudge_coords():609                  -            -            -       529    3.56              -              -
INFO 2019-06-11 02:37:40,201Z lrauvNc4ToNetcdf.py nudge_coords():631    0:        0.320    0.0000895    0.0000683       182    1.22           6.20          10.38
INFO 2019-06-11 02:37:40,207Z lrauvNc4ToNetcdf.py nudge_coords():631    1:        0.370   -0.0004813   -0.0021378      8522   57.48          -4.10          -6.89
INFO 2019-06-11 02:37:40,213Z lrauvNc4ToNetcdf.py nudge_coords():631    2:        0.365    0.0000840    0.0000143       128    0.94           1.67           2.81
INFO 2019-06-11 02:37:40,219Z lrauvNc4ToNetcdf.py nudge_coords():631    3:        0.365    0.0000237    0.0000143        41    0.27           5.88           9.87
INFO 2019-06-11 02:37:40,225Z lrauvNc4ToNetcdf.py nudge_coords():631    4:        0.364    0.0006293    0.0002036       851    5.78           3.88           6.53
INFO 2019-06-11 02:37:40,231Z lrauvNc4ToNetcdf.py nudge_coords():631    5:        0.362    0.0008746    0.0000369      1020    6.86           0.59           1.00
INFO 2019-06-11 02:37:40,237Z lrauvNc4ToNetcdf.py nudge_coords():631    6:        0.365    0.0002503   -0.0002941       805    5.41          -5.99         -10.06
INFO 2019-06-11 02:37:40,243Z lrauvNc4ToNetcdf.py nudge_coords():631    7:        0.369    0.0000643   -0.0001160       250    1.68          -7.63         -12.80
INFO 2019-06-11 02:37:40,248Z lrauvNc4ToNetcdf.py nudge_coords():631    8:        0.373    0.0000078   -0.0000275       328    2.21          -1.37          -2.31
INFO 2019-06-11 02:37:40,254Z lrauvNc4ToNetcdf.py nudge_coords():631    9:        0.372   -0.0001104   -0.0004191      9071   61.08          -0.76          -1.27
INFO 2019-06-11 02:37:40,261Z lrauvNc4ToNetcdf.py nudge_coords():661   11:            -            -            -       699    4.73              -              -
INFO 2019-06-11 02:37:40,261Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 21897
INFO 2019-06-11 02:37:40,276Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190403T213543/20190404T020701/data.csv
INFO 2019-06-11 02:37:40,295Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database
INFO 2019-06-11 02:37:40,300Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-11 02:37:40,800Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190403T223543/201904032235_201904040107_2S_scieng.nc