INFO 2019-06-11 02:37:41,506Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4 file...
INFO 2019-06-11 02:37:41,506Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201904040107_201904040331.nc4
INFO 2019-06-11 02:37:42,406Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
INFO 2019-06-11 02:37:49,478Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes
WARNING 2019-06-11 02:37:49,486Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
INFO 2019-06-11 02:37:49,527Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-06-11 02:37:49,528Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable sea_water_salinity empty so skipping
INFO 2019-06-11 02:37:49,529Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable sea_water_temperature empty so skipping
WARNING 2019-06-11 02:37:49,530Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
WARNING 2019-06-11 02:37:49,530Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
INFO 2019-06-11 02:37:49,561Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-11 02:37:49,561Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
INFO 2019-06-11 02:37:49,574Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-11 02:37:49,579Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-11 02:37:49,583Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-11 02:37:49,587Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-11 02:37:49,587Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
INFO 2019-06-11 02:37:49,671Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-11 02:37:49,967Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-11 02:37:49,967Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
WARNING 2019-06-11 02:37:49,967Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
WARNING 2019-06-11 02:37:49,967Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
INFO 2019-06-11 02:37:49,969Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable concentration_of_chromophoric_dissolved_organic_matter_in_sea_water empty so skipping
INFO 2019-06-11 02:37:49,970Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2019-06-11 02:37:49,971Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-11 02:37:49,973Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable VolumeScatCoeff117deg700nm empty so skipping
INFO 2019-06-11 02:37:49,974Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable mass_concentration_of_petroleum_hydrocarbons_in_sea_water empty so skipping
INFO 2019-06-11 02:37:49,978Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:37:50,419Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:37:50,866Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:37:51,308Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-11 02:37:51,309Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
WARNING 2019-06-11 02:37:51,309Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
WARNING 2019-06-11 02:37:51,309Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
WARNING 2019-06-11 02:37:51,309Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
INFO 2019-06-11 02:37:51,315Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-06-11 02:37:51,321Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-06-11 02:37:51,321Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
INFO 2019-06-11 02:37:51,766Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:37:52,214Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:37:52,655Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:37:52,656Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331.nc4
INFO 2019-06-11 02:37:53,297Z lrauvNc4ToNetcdf.py nudge_coords():593 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-11 02:37:53,300Z lrauvNc4ToNetcdf.py nudge_coords():609                  -            -            -       114    0.76              -              -
INFO 2019-06-11 02:37:53,303Z lrauvNc4ToNetcdf.py nudge_coords():631    0:        0.379    0.0002338   -0.0000307       601    4.04          -0.84          -1.41
INFO 2019-06-11 02:37:53,309Z lrauvNc4ToNetcdf.py nudge_coords():631    1:        0.369    0.0000514    0.0000072       154    1.03           0.77           1.29
INFO 2019-06-11 02:37:53,315Z lrauvNc4ToNetcdf.py nudge_coords():631    2:        0.369   -0.0002326   -0.0003042      5204   35.04          -0.97          -1.61
INFO 2019-06-11 02:37:53,322Z lrauvNc4ToNetcdf.py nudge_coords():631    3:        0.346    0.0001650   -0.0002362       801    5.39          -4.88          -8.12
INFO 2019-06-11 02:37:53,328Z lrauvNc4ToNetcdf.py nudge_coords():631    4:        0.361    0.0002830   -0.0002224       892    6.00          -4.12          -6.87
INFO 2019-06-11 02:37:53,334Z lrauvNc4ToNetcdf.py nudge_coords():631    5:        0.341    0.0003206   -0.0004406       803    5.40          -9.07         -15.12
INFO 2019-06-11 02:37:53,340Z lrauvNc4ToNetcdf.py nudge_coords():631    6:        0.369    0.0001782   -0.0001199       440    2.96          -4.51          -7.52
INFO 2019-06-11 02:37:53,346Z lrauvNc4ToNetcdf.py nudge_coords():631    7:        0.284    0.0000554   -0.0001606       171    1.15         -15.58         -25.96
INFO 2019-06-11 02:37:53,352Z lrauvNc4ToNetcdf.py nudge_coords():631    8:        0.351    0.0011903   -0.0013739      4896   32.97          -4.62          -7.72
INFO 2019-06-11 02:37:53,358Z lrauvNc4ToNetcdf.py nudge_coords():631    9:        0.359    0.0000963   -0.0000372       118    0.84          -4.89          -8.17
INFO 2019-06-11 02:37:53,364Z lrauvNc4ToNetcdf.py nudge_coords():631   10:        0.359   -0.0008665   -0.0015867      4530   30.50          -5.74          -9.64
INFO 2019-06-11 02:37:53,371Z lrauvNc4ToNetcdf.py nudge_coords():631   11:        0.344   -0.0001289   -0.0000039       897    6.06          -0.07          -0.12
INFO 2019-06-11 02:37:53,377Z lrauvNc4ToNetcdf.py nudge_coords():631   12:        0.377   -0.0001722   -0.0001614       798    5.37          -3.32          -5.57
INFO 2019-06-11 02:37:53,383Z lrauvNc4ToNetcdf.py nudge_coords():631   13:        0.358   -0.0000404   -0.0003579       924    6.21          -6.35         -10.67
INFO 2019-06-11 02:37:53,389Z lrauvNc4ToNetcdf.py nudge_coords():661   15:            -            -            -        30    0.20              -              -
INFO 2019-06-11 02:37:53,389Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 21373
INFO 2019-06-11 02:37:53,404Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190404T000701/20190404T043102/data.csv
INFO 2019-06-11 02:37:53,422Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database
INFO 2019-06-11 02:37:53,427Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-11 02:37:53,840Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T010701/201904040107_201904040331_2S_scieng.nc