INFO 2019-06-11 02:38:56,930Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4 file...
INFO 2019-06-11 02:38:56,930Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201904041659_201904041704.nc4
INFO 2019-06-11 02:39:00,565Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
INFO 2019-06-11 02:39:00,888Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes
WARNING 2019-06-11 02:39:00,891Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
INFO 2019-06-11 02:39:00,896Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-06-11 02:39:00,897Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable sea_water_salinity empty so skipping
INFO 2019-06-11 02:39:00,898Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable sea_water_temperature empty so skipping
WARNING 2019-06-11 02:39:00,899Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
WARNING 2019-06-11 02:39:00,899Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
INFO 2019-06-11 02:39:00,903Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-11 02:39:00,903Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
INFO 2019-06-11 02:39:00,909Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-11 02:39:00,913Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-11 02:39:00,916Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-11 02:39:00,920Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-11 02:39:00,921Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
INFO 2019-06-11 02:39:00,925Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-11 02:39:00,929Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-11 02:39:00,929Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
WARNING 2019-06-11 02:39:00,929Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
WARNING 2019-06-11 02:39:00,929Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
INFO 2019-06-11 02:39:00,933Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-11 02:39:00,937Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-11 02:39:00,938Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-11 02:39:00,942Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-11 02:39:00,945Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-11 02:39:00,946Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2019-06-11 02:39:00,957Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:39:00,968Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:39:00,979Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-11 02:39:00,979Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
WARNING 2019-06-11 02:39:00,980Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
WARNING 2019-06-11 02:39:00,980Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
WARNING 2019-06-11 02:39:00,980Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
INFO 2019-06-11 02:39:00,982Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable platform_battery_charge empty so skipping
INFO 2019-06-11 02:39:00,984Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable platform_battery_voltage empty so skipping
WARNING 2019-06-11 02:39:00,984Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
INFO 2019-06-11 02:39:01,012Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:39:01,040Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:39:01,067Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:39:01,068Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704.nc4
INFO 2019-06-11 02:39:01,168Z lrauvNc4ToNetcdf.py nudge_coords():593 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-11 02:39:01,169Z lrauvNc4ToNetcdf.py nudge_coords():609                  -            -            -         0    0.00              -              -
INFO 2019-06-11 02:39:01,171Z lrauvNc4ToNetcdf.py nudge_coords():631    0:        0.330    0.0000333    0.0000007       176    1.27           0.06           0.10
INFO 2019-06-11 02:39:01,177Z lrauvNc4ToNetcdf.py nudge_coords():661    2:            -            -            -       178    1.19              -              -
INFO 2019-06-11 02:39:01,177Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 354
INFO 2019-06-11 02:39:01,187Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190404T155953/20190404T180456/data.csv
INFO 2019-06-11 02:39:01,209Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database
INFO 2019-06-11 02:39:01,213Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-11 02:39:01,321Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T165942/201904041659_201904041704_2S_scieng.nc