INFO 2019-06-11 02:39:01,720Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 file... INFO 2019-06-11 02:39:01,721Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201904041705_201904041841.nc4 INFO 2019-06-11 02:39:02,785Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 INFO 2019-06-11 02:39:07,547Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes WARNING 2019-06-11 02:39:07,554Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 INFO 2019-06-11 02:39:07,585Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2019-06-11 02:39:07,587Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable sea_water_salinity empty so skipping INFO 2019-06-11 02:39:07,588Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable sea_water_temperature empty so skipping WARNING 2019-06-11 02:39:07,588Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 WARNING 2019-06-11 02:39:07,588Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 INFO 2019-06-11 02:39:07,615Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle WARNING 2019-06-11 02:39:07,615Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 INFO 2019-06-11 02:39:07,628Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2019-06-11 02:39:07,633Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2019-06-11 02:39:07,637Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2019-06-11 02:39:07,641Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude WARNING 2019-06-11 02:39:07,641Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 INFO 2019-06-11 02:39:07,698Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2019-06-11 02:39:07,918Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate WARNING 2019-06-11 02:39:07,918Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 WARNING 2019-06-11 02:39:07,918Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 WARNING 2019-06-11 02:39:07,919Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 INFO 2019-06-11 02:39:07,923Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-06-11 02:39:07,927Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-06-11 02:39:07,928Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping INFO 2019-06-11 02:39:07,932Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-06-11 02:39:07,936Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-06-11 02:39:07,940Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:39:08,232Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:39:08,527Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:39:08,817Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources WARNING 2019-06-11 02:39:08,817Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 WARNING 2019-06-11 02:39:08,817Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 WARNING 2019-06-11 02:39:08,817Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 WARNING 2019-06-11 02:39:08,817Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 INFO 2019-06-11 02:39:08,824Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2019-06-11 02:39:08,830Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage WARNING 2019-06-11 02:39:08,830Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 INFO 2019-06-11 02:39:09,133Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:39:09,440Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:39:09,737Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:39:09,739Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841.nc4 INFO 2019-06-11 02:39:10,212Z lrauvNc4ToNetcdf.py nudge_coords():593 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-06-11 02:39:10,213Z lrauvNc4ToNetcdf.py nudge_coords():609 - - - 0 0.00 - - INFO 2019-06-11 02:39:10,217Z lrauvNc4ToNetcdf.py nudge_coords():631 0: 0.352 0.0000122 -0.0000275 168 1.27 -2.39 -4.02 INFO 2019-06-11 02:39:10,223Z lrauvNc4ToNetcdf.py nudge_coords():631 1: 0.372 0.0001612 0.0000822 796 5.38 1.68 2.83 INFO 2019-06-11 02:39:10,229Z lrauvNc4ToNetcdf.py nudge_coords():631 2: 0.369 0.0000637 0.0000125 204 1.37 1.01 1.69 INFO 2019-06-11 02:39:10,235Z lrauvNc4ToNetcdf.py nudge_coords():631 3: 0.367 0.0001002 0.0000153 323 2.17 0.78 1.31 INFO 2019-06-11 02:39:10,241Z lrauvNc4ToNetcdf.py nudge_coords():631 4: 0.368 -0.0006800 -0.0003813 1262 8.50 -4.95 -8.32 INFO 2019-06-11 02:39:10,246Z lrauvNc4ToNetcdf.py nudge_coords():631 5: 0.369 0.0001820 0.0000888 623 4.19 2.34 3.93 INFO 2019-06-11 02:39:10,252Z lrauvNc4ToNetcdf.py nudge_coords():631 6: 0.373 0.0000517 0.0000205 126 0.84 2.69 4.52 INFO 2019-06-11 02:39:10,258Z lrauvNc4ToNetcdf.py nudge_coords():631 7: 0.330 0.0007699 -0.0023446 4801 32.34 -8.02 -13.44 INFO 2019-06-11 02:39:10,265Z lrauvNc4ToNetcdf.py nudge_coords():631 8: 0.365 -0.0000352 -0.0000025 81 0.60 -0.46 -0.78 INFO 2019-06-11 02:39:10,275Z lrauvNc4ToNetcdf.py nudge_coords():631 9: 0.340 -0.0009047 -0.0017737 4830 32.53 -6.05 -10.10 INFO 2019-06-11 02:39:10,281Z lrauvNc4ToNetcdf.py nudge_coords():631 10: 0.378 -0.0000357 0.0000035 38 0.25 1.56 2.60 INFO 2019-06-11 02:39:10,287Z lrauvNc4ToNetcdf.py nudge_coords():631 11: 0.365 0.0002280 0.0000912 624 4.51 2.24 3.74 INFO 2019-06-11 02:39:10,293Z lrauvNc4ToNetcdf.py nudge_coords():661 13: - - - 65 0.43 - - INFO 2019-06-11 02:39:10,293Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 13941 INFO 2019-06-11 02:39:10,310Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190404T160508/20190404T194128/data.csv INFO 2019-06-11 02:39:10,333Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database INFO 2019-06-11 02:39:10,339Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2019-06-11 02:39:10,495Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190403_20190405/20190404T170458/201904041705_201904041841_2S_scieng.nc