INFO 2019-06-11 02:41:18,195Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4 file...
INFO 2019-06-11 02:41:18,196Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201904111651_201904111857.nc4
INFO 2019-06-11 02:41:19,156Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
INFO 2019-06-11 02:41:25,234Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes
WARNING 2019-06-11 02:41:25,243Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
INFO 2019-06-11 02:41:25,311Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-06-11 02:41:25,313Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable sea_water_salinity empty so skipping
INFO 2019-06-11 02:41:25,314Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable sea_water_temperature empty so skipping
WARNING 2019-06-11 02:41:25,314Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
WARNING 2019-06-11 02:41:25,314Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
INFO 2019-06-11 02:41:25,347Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-11 02:41:25,348Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
INFO 2019-06-11 02:41:25,369Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-11 02:41:25,374Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-11 02:41:25,378Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-11 02:41:25,383Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-11 02:41:25,383Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
INFO 2019-06-11 02:41:25,450Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-11 02:41:25,686Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-11 02:41:25,687Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
WARNING 2019-06-11 02:41:25,687Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
WARNING 2019-06-11 02:41:25,687Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
INFO 2019-06-11 02:41:25,691Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-11 02:41:25,695Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-11 02:41:25,696Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-11 02:41:25,700Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-11 02:41:25,704Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-11 02:41:25,708Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:41:26,084Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:41:26,462Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:41:26,837Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-11 02:41:26,837Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
WARNING 2019-06-11 02:41:26,837Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
WARNING 2019-06-11 02:41:26,837Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
WARNING 2019-06-11 02:41:26,837Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
INFO 2019-06-11 02:41:26,844Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-06-11 02:41:26,850Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-06-11 02:41:26,850Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
INFO 2019-06-11 02:41:27,242Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:41:27,629Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:41:28,015Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:41:28,016Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857.nc4
INFO 2019-06-11 02:41:28,592Z lrauvNc4ToNetcdf.py nudge_coords():593 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-11 02:41:28,593Z lrauvNc4ToNetcdf.py nudge_coords():609 - - - 0 0.00 - -
INFO 2019-06-11 02:41:28,596Z lrauvNc4ToNetcdf.py nudge_coords():631 0: 0.369 0.0000014 -0.0000028 111 0.78 -0.43 -0.67
INFO 2019-06-11 02:41:28,602Z lrauvNc4ToNetcdf.py nudge_coords():631 1: 0.370 0.0000074 0.0000118 466 3.13 0.44 0.70
INFO 2019-06-11 02:41:28,608Z lrauvNc4ToNetcdf.py nudge_coords():631 2: 0.373 -0.0000203 -0.0000121 119 0.79 -1.79 -2.82
INFO 2019-06-11 02:41:28,614Z lrauvNc4ToNetcdf.py nudge_coords():631 3: 0.371 -0.0001615 -0.0002611 4819 32.45 -0.94 -1.49
INFO 2019-06-11 02:41:28,620Z lrauvNc4ToNetcdf.py nudge_coords():631 4: 0.372 -0.0000631 0.0000074 146 1.07 0.81 1.28
INFO 2019-06-11 02:41:28,626Z lrauvNc4ToNetcdf.py nudge_coords():631 5: 0.367 0.0000012 0.0000985 628 4.23 2.73 4.32
INFO 2019-06-11 02:41:28,632Z lrauvNc4ToNetcdf.py nudge_coords():631 6: 0.323 -0.0001293 0.0000845 385 2.76 3.59 5.68
INFO 2019-06-11 02:41:28,638Z lrauvNc4ToNetcdf.py nudge_coords():631 7: 0.439 0.0000048 0.0000045 44 0.29 1.82 2.88
INFO 2019-06-11 02:41:28,644Z lrauvNc4ToNetcdf.py nudge_coords():631 8: 0.363 -0.0000688 0.0002055 642 4.34 5.54 8.77
INFO 2019-06-11 02:41:28,649Z lrauvNc4ToNetcdf.py nudge_coords():631 9: 0.366 -0.0000035 0.0000710 152 1.02 8.16 12.91
INFO 2019-06-11 02:41:28,655Z lrauvNc4ToNetcdf.py nudge_coords():631 10: 0.369 0.0008784 0.0000380 4161 28.03 0.16 0.25
INFO 2019-06-11 02:41:28,662Z lrauvNc4ToNetcdf.py nudge_coords():631 11: 0.369 0.0000060 0.0000041 285 2.06 0.23 0.37
INFO 2019-06-11 02:41:28,668Z lrauvNc4ToNetcdf.py nudge_coords():631 12: 0.369 -0.0000036 0.0000007 44 0.29 0.28 0.44
INFO 2019-06-11 02:41:28,673Z lrauvNc4ToNetcdf.py nudge_coords():631 13: 0.345 0.0001061 -0.0000022 655 4.40 -0.06 -0.09
INFO 2019-06-11 02:41:28,679Z lrauvNc4ToNetcdf.py nudge_coords():631 14: 0.361 0.0000191 -0.0000171 122 0.81 -2.47 -3.89
INFO 2019-06-11 02:41:28,685Z lrauvNc4ToNetcdf.py nudge_coords():631 15: 0.354 0.0000301 -0.0000126 136 0.91 -1.63 -2.56
INFO 2019-06-11 02:41:28,691Z lrauvNc4ToNetcdf.py nudge_coords():631 16: 0.365 0.0000312 -0.0000095 88 0.59 -1.90 -2.99
INFO 2019-06-11 02:41:28,697Z lrauvNc4ToNetcdf.py nudge_coords():631 17: 0.353 0.0001893 0.0001146 1900 12.84 1.05 1.65
INFO 2019-06-11 02:41:28,703Z lrauvNc4ToNetcdf.py nudge_coords():631 18: 0.368 0.0000210 -0.0000422 209 1.58 -3.15 -4.96
INFO 2019-06-11 02:41:28,709Z lrauvNc4ToNetcdf.py nudge_coords():631 19: 0.365 0.0001861 -0.0001026 1830 12.34 -0.98 -1.54
INFO 2019-06-11 02:41:28,715Z lrauvNc4ToNetcdf.py nudge_coords():631 20: 0.373 0.0000450 0.0000038 38 0.25 1.80 2.84
INFO 2019-06-11 02:41:28,721Z lrauvNc4ToNetcdf.py nudge_coords():631 21: 0.352 0.0000225 0.0000643 1097 7.64 0.99 1.56
INFO 2019-06-11 02:41:28,727Z lrauvNc4ToNetcdf.py nudge_coords():661 23: - - - 29 0.19 - -
INFO 2019-06-11 02:41:28,727Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 18106
INFO 2019-06-11 02:41:28,744Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190411T155128/20190411T195732/data.csv
INFO 2019-06-11 02:41:28,772Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database
INFO 2019-06-11 02:41:28,778Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-11 02:41:29,299Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190411_20190411/20190411T165118/201904111651_201904111857_2S_scieng.nc