INFO 2019-06-11 02:42:20,952Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 file... INFO 2019-06-11 02:42:20,953Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201905100124_201905100506.nc4 INFO 2019-06-11 02:42:24,668Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 INFO 2019-06-11 02:42:35,328Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes WARNING 2019-06-11 02:42:35,338Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 INFO 2019-06-11 02:42:35,368Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2019-06-11 02:42:35,792Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity INFO 2019-06-11 02:42:36,213Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature WARNING 2019-06-11 02:42:36,213Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 WARNING 2019-06-11 02:42:36,213Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 INFO 2019-06-11 02:42:36,267Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle WARNING 2019-06-11 02:42:36,267Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 INFO 2019-06-11 02:42:36,276Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2019-06-11 02:42:36,280Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2019-06-11 02:42:36,284Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2019-06-11 02:42:36,289Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude WARNING 2019-06-11 02:42:36,289Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 INFO 2019-06-11 02:42:36,415Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2019-06-11 02:42:36,966Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate WARNING 2019-06-11 02:42:36,966Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 WARNING 2019-06-11 02:42:36,966Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 WARNING 2019-06-11 02:42:36,966Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 INFO 2019-06-11 02:42:37,053Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-06-11 02:42:37,140Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-06-11 02:42:37,141Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping INFO 2019-06-11 02:42:37,227Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-06-11 02:42:37,314Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-06-11 02:42:37,318Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:42:37,996Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:42:38,671Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:42:39,349Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources WARNING 2019-06-11 02:42:39,349Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 WARNING 2019-06-11 02:42:39,349Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 WARNING 2019-06-11 02:42:39,349Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 WARNING 2019-06-11 02:42:39,349Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 INFO 2019-06-11 02:42:39,357Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2019-06-11 02:42:39,362Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage WARNING 2019-06-11 02:42:39,362Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 INFO 2019-06-11 02:42:40,029Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:42:40,690Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:42:41,352Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:42:41,353Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506.nc4 INFO 2019-06-11 02:42:42,288Z lrauvNc4ToNetcdf.py nudge_coords():593 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-06-11 02:42:42,290Z lrauvNc4ToNetcdf.py nudge_coords():609 - - - 889 5.98 - - INFO 2019-06-11 02:42:42,294Z lrauvNc4ToNetcdf.py nudge_coords():631 0: 0.361 -0.0000072 -0.0000355 149 1.00 -4.14 -6.59 INFO 2019-06-11 02:42:42,301Z lrauvNc4ToNetcdf.py nudge_coords():631 1: 0.360 0.0033782 0.0002681 7093 47.77 0.66 1.04 INFO 2019-06-11 02:42:42,307Z lrauvNc4ToNetcdf.py nudge_coords():631 2: 0.365 -0.0000443 -0.0000506 95 0.71 -8.28 -13.14 INFO 2019-06-11 02:42:42,313Z lrauvNc4ToNetcdf.py nudge_coords():631 3: 0.356 0.0030615 0.0000214 7037 47.39 0.05 0.08 INFO 2019-06-11 02:42:42,320Z lrauvNc4ToNetcdf.py nudge_coords():631 4: 0.335 -0.0001754 0.0000290 441 3.41 0.99 1.57 INFO 2019-06-11 02:42:42,326Z lrauvNc4ToNetcdf.py nudge_coords():631 5: 0.360 0.0017055 0.0001459 3740 25.18 0.68 1.07 INFO 2019-06-11 02:42:42,332Z lrauvNc4ToNetcdf.py nudge_coords():631 6: 0.324 -0.0002862 0.0000498 904 6.15 0.95 1.50 INFO 2019-06-11 02:42:42,338Z lrauvNc4ToNetcdf.py nudge_coords():631 7: 0.360 -0.0001540 0.0000303 811 5.45 0.65 1.03 INFO 2019-06-11 02:42:42,344Z lrauvNc4ToNetcdf.py nudge_coords():631 8: 0.362 -0.0002217 0.0000592 828 5.57 1.25 1.97 INFO 2019-06-11 02:42:42,350Z lrauvNc4ToNetcdf.py nudge_coords():631 9: 0.361 -0.0000959 0.0000193 290 1.95 1.16 1.84 INFO 2019-06-11 02:42:42,356Z lrauvNc4ToNetcdf.py nudge_coords():631 10: 0.369 -0.0000657 0.0000170 165 1.10 1.81 2.85 INFO 2019-06-11 02:42:42,362Z lrauvNc4ToNetcdf.py nudge_coords():631 11: 0.384 0.0002422 0.0005831 3388 22.83 2.99 4.73 INFO 2019-06-11 02:42:42,368Z lrauvNc4ToNetcdf.py nudge_coords():631 12: 0.335 -0.0001088 -0.0000007 182 1.33 -0.06 -0.09 INFO 2019-06-11 02:42:42,374Z lrauvNc4ToNetcdf.py nudge_coords():631 13: 0.377 0.0006982 0.0004956 3284 22.11 2.63 4.15 INFO 2019-06-11 02:42:42,381Z lrauvNc4ToNetcdf.py nudge_coords():631 14: 0.313 -0.0002818 0.0000117 313 2.47 0.55 0.88 INFO 2019-06-11 02:42:42,387Z lrauvNc4ToNetcdf.py nudge_coords():661 16: - - - 3178 21.40 - - INFO 2019-06-11 02:42:42,387Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 31898 INFO 2019-06-11 02:42:42,403Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190510T002453/20190510T060648/data.csv INFO 2019-06-11 02:42:42,428Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database INFO 2019-06-11 02:42:42,434Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2019-06-11 02:42:42,611Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T012453/201905100124_201905100506_2S_scieng.nc