INFO 2019-06-11 02:42:44,421Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4 file...
INFO 2019-06-11 02:42:44,421Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201905100506_201905101931.nc4
INFO 2019-06-11 02:42:45,715Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
INFO 2019-06-11 02:43:26,643Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes
WARNING 2019-06-11 02:43:26,674Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
INFO 2019-06-11 02:43:26,810Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-06-11 02:43:30,631Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity
INFO 2019-06-11 02:43:34,443Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature
WARNING 2019-06-11 02:43:34,444Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
WARNING 2019-06-11 02:43:34,444Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
INFO 2019-06-11 02:43:34,690Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-11 02:43:34,691Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
INFO 2019-06-11 02:43:34,715Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-11 02:43:34,724Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-11 02:43:34,730Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-11 02:43:34,735Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-11 02:43:34,736Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
INFO 2019-06-11 02:43:35,060Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-11 02:43:37,041Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-11 02:43:37,041Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
WARNING 2019-06-11 02:43:37,041Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
WARNING 2019-06-11 02:43:37,042Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
INFO 2019-06-11 02:43:37,796Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-11 02:43:38,554Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-11 02:43:38,555Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-11 02:43:39,317Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-11 02:43:40,080Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-11 02:43:40,086Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:43:42,682Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:43:45,304Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:43:47,926Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-11 02:43:47,926Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
WARNING 2019-06-11 02:43:47,926Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
WARNING 2019-06-11 02:43:47,926Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
WARNING 2019-06-11 02:43:47,926Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
INFO 2019-06-11 02:43:47,936Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-06-11 02:43:47,943Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-06-11 02:43:47,943Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
INFO 2019-06-11 02:43:50,437Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:43:52,928Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:43:55,415Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:43:55,418Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931.nc4
INFO 2019-06-11 02:43:58,683Z lrauvNc4ToNetcdf.py nudge_coords():593 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-11 02:43:58,685Z lrauvNc4ToNetcdf.py nudge_coords():609 - - - 3 0.01 - -
INFO 2019-06-11 02:43:58,701Z lrauvNc4ToNetcdf.py nudge_coords():631 0: 0.375 -0.0000568 -0.0000073 38 0.25 -3.45 -5.47
INFO 2019-06-11 02:43:58,708Z lrauvNc4ToNetcdf.py nudge_coords():631 1: 0.373 -0.0001130 0.0000033 62 0.62 0.63 0.99
INFO 2019-06-11 02:43:58,714Z lrauvNc4ToNetcdf.py nudge_coords():631 2: 0.406 -0.0004312 0.0000563 432 3.13 2.11 3.34
INFO 2019-06-11 02:43:58,720Z lrauvNc4ToNetcdf.py nudge_coords():631 3: 0.372 0.0032945 0.0018528 4966 33.45 6.58 10.26
INFO 2019-06-11 02:43:58,727Z lrauvNc4ToNetcdf.py nudge_coords():631 4: 0.361 -0.0003415 0.0001495 423 3.12 5.70 8.89
INFO 2019-06-11 02:43:58,734Z lrauvNc4ToNetcdf.py nudge_coords():631 5: 0.347 -0.0007358 0.0038152 8412 56.64 8.01 12.48
INFO 2019-06-11 02:43:58,741Z lrauvNc4ToNetcdf.py nudge_coords():631 6: 0.377 -0.0003227 0.0001630 429 3.27 5.92 9.23
INFO 2019-06-11 02:43:58,747Z lrauvNc4ToNetcdf.py nudge_coords():631 7: 0.334 -0.0045442 0.0045268 8443 57.01 9.46 14.71
INFO 2019-06-11 02:43:58,754Z lrauvNc4ToNetcdf.py nudge_coords():631 8: 0.357 -0.0001734 0.0000868 141 1.03 10.06 15.64
INFO 2019-06-11 02:43:58,761Z lrauvNc4ToNetcdf.py nudge_coords():631 9: 0.370 -0.0003452 0.0002260 425 3.12 8.64 13.42
INFO 2019-06-11 02:43:58,767Z lrauvNc4ToNetcdf.py nudge_coords():631 10: 0.359 0.0015122 0.0029330 9458 63.71 5.65 8.53
INFO 2019-06-11 02:43:58,774Z lrauvNc4ToNetcdf.py nudge_coords():631 11: 0.300 -0.0005087 0.0002998 428 3.44 10.71 16.15
INFO 2019-06-11 02:43:58,780Z lrauvNc4ToNetcdf.py nudge_coords():631 12: 0.362 0.0029072 0.0041264 9080 61.14 8.49 12.51
INFO 2019-06-11 02:43:58,787Z lrauvNc4ToNetcdf.py nudge_coords():631 13: 0.348 -0.0001023 0.0003015 421 3.35 11.34 16.69
INFO 2019-06-11 02:43:58,794Z lrauvNc4ToNetcdf.py nudge_coords():631 14: 0.363 0.0019919 0.0024776 9109 61.34 5.18 7.48
INFO 2019-06-11 02:43:58,801Z lrauvNc4ToNetcdf.py nudge_coords():631 15: 0.365 -0.0002188 0.0000297 352 3.00 1.27 1.83
INFO 2019-06-11 02:43:58,807Z lrauvNc4ToNetcdf.py nudge_coords():631 16: 0.360 -0.0003786 -0.0001180 9516 64.10 -0.24 -0.34
INFO 2019-06-11 02:43:58,815Z lrauvNc4ToNetcdf.py nudge_coords():631 17: 0.348 -0.0002376 -0.0002117 366 2.80 -9.73 -14.00
INFO 2019-06-11 02:43:58,821Z lrauvNc4ToNetcdf.py nudge_coords():631 18: 0.363 0.0002622 -0.0027260 10289 69.30 -5.05 -7.29
INFO 2019-06-11 02:43:58,829Z lrauvNc4ToNetcdf.py nudge_coords():631 19: 0.365 -0.0000292 -0.0000388 101 0.70 -7.17 -10.35
INFO 2019-06-11 02:43:58,835Z lrauvNc4ToNetcdf.py nudge_coords():631 20: 0.361 -0.0001525 -0.0002812 751 5.05 -7.15 -10.31
INFO 2019-06-11 02:43:58,841Z lrauvNc4ToNetcdf.py nudge_coords():631 21: 0.377 -0.0000112 -0.0000445 110 0.74 -7.73 -11.16
INFO 2019-06-11 02:43:58,849Z lrauvNc4ToNetcdf.py nudge_coords():631 22: 0.389 -0.0000881 -0.0001403 481 3.23 -5.57 -8.04
INFO 2019-06-11 02:43:58,855Z lrauvNc4ToNetcdf.py nudge_coords():631 23: 0.339 -0.0000262 -0.0000433 93 0.62 -8.97 -12.94
INFO 2019-06-11 02:43:58,862Z lrauvNc4ToNetcdf.py nudge_coords():631 24: 0.363 0.0036821 -0.0014582 9601 64.72 -2.90 -4.18
INFO 2019-06-11 02:43:58,869Z lrauvNc4ToNetcdf.py nudge_coords():631 25: 0.369 -0.0001032 -0.0004010 606 4.74 -10.88 -15.67
INFO 2019-06-11 02:43:58,876Z lrauvNc4ToNetcdf.py nudge_coords():631 26: 0.371 0.0022406 -0.0013947 5268 35.47 -5.07 -7.29
INFO 2019-06-11 02:43:58,883Z lrauvNc4ToNetcdf.py nudge_coords():631 27: 0.363 -0.0001165 -0.0006975 849 5.75 -15.63 -22.48
INFO 2019-06-11 02:43:58,889Z lrauvNc4ToNetcdf.py nudge_coords():631 28: 0.370 -0.0000857 -0.0005213 836 5.62 -11.93 -17.18
INFO 2019-06-11 02:43:58,896Z lrauvNc4ToNetcdf.py nudge_coords():631 29: 0.365 -0.0001297 -0.0007545 986 6.64 -14.63 -21.07
INFO 2019-06-11 02:43:58,902Z lrauvNc4ToNetcdf.py nudge_coords():631 30: 0.350 -0.0000035 -0.0006095 855 5.76 -13.60 -19.60
INFO 2019-06-11 02:43:58,909Z lrauvNc4ToNetcdf.py nudge_coords():631 31: 0.385 0.0000314 -0.0002641 398 2.67 -12.69 -18.30
INFO 2019-06-11 02:43:58,915Z lrauvNc4ToNetcdf.py nudge_coords():631 32: 0.365 -0.0000077 -0.0002453 519 3.49 -9.02 -13.01
INFO 2019-06-11 02:43:58,922Z lrauvNc4ToNetcdf.py nudge_coords():631 33: 0.368 -0.0028937 0.0009969 4853 32.69 3.89 5.65
INFO 2019-06-11 02:43:58,929Z lrauvNc4ToNetcdf.py nudge_coords():631 34: 0.334 -0.0000175 -0.0001083 177 1.20 -11.52 -16.71
INFO 2019-06-11 02:43:58,935Z lrauvNc4ToNetcdf.py nudge_coords():631 35: 0.364 -0.0029516 0.0008594 4684 31.55 3.46 5.05
INFO 2019-06-11 02:43:58,942Z lrauvNc4ToNetcdf.py nudge_coords():631 36: 0.378 0.0000660 -0.0001155 280 2.23 -6.58 -9.60
INFO 2019-06-11 02:43:58,948Z lrauvNc4ToNetcdf.py nudge_coords():631 37: 0.353 -0.0021489 0.0011718 4825 32.51 4.55 6.68
INFO 2019-06-11 02:43:58,955Z lrauvNc4ToNetcdf.py nudge_coords():631 38: 0.345 0.0001733 -0.0001163 310 2.43 -6.04 -8.86
INFO 2019-06-11 02:43:58,962Z lrauvNc4ToNetcdf.py nudge_coords():631 39: 0.375 -0.0011022 0.0004132 4914 33.10 1.57 2.31
INFO 2019-06-11 02:43:58,969Z lrauvNc4ToNetcdf.py nudge_coords():631 40: 0.362 0.0002693 -0.0002433 295 2.17 -14.02 -20.73
INFO 2019-06-11 02:43:58,976Z lrauvNc4ToNetcdf.py nudge_coords():631 41: 0.357 -0.0011353 0.0011330 4715 31.76 4.45 6.61
INFO 2019-06-11 02:43:58,983Z lrauvNc4ToNetcdf.py nudge_coords():631 42: 0.365 0.0002037 -0.0001937 258 2.08 -11.60 -17.25
INFO 2019-06-11 02:43:58,990Z lrauvNc4ToNetcdf.py nudge_coords():631 43: 0.366 -0.0007372 0.0010539 4719 31.78 4.10 6.14
INFO 2019-06-11 02:43:58,997Z lrauvNc4ToNetcdf.py nudge_coords():631 44: 0.358 0.0008465 -0.0002845 1149 8.14 -4.32 -6.47
INFO 2019-06-11 02:43:59,003Z lrauvNc4ToNetcdf.py nudge_coords():631 45: 0.356 0.0010702 -0.0001087 1091 7.34 -1.83 -2.74
INFO 2019-06-11 02:43:59,010Z lrauvNc4ToNetcdf.py nudge_coords():631 46: 0.354 0.0470358 -0.0161608 871 6.00 -327.34 -499.28
INFO 2019-06-11 02:43:59,016Z lrauvNc4ToNetcdf.py nudge_coords():661 48: - - - 60 0.43 - -
INFO 2019-06-11 02:43:59,016Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 127445
INFO 2019-06-11 02:43:59,036Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190510T040649/20190510T203135/data.csv
INFO 2019-06-11 02:43:59,054Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database
INFO 2019-06-11 02:43:59,065Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-11 02:43:59,336Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190508_20190510/20190510T050648/201905100506_201905101931_2S_scieng.nc