INFO 2019-06-11 02:44:30,422Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4 file...
INFO 2019-06-11 02:44:30,423Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201905232233_201905240007.nc4
INFO 2019-06-11 02:44:31,784Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
INFO 2019-06-11 02:44:36,455Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes
WARNING 2019-06-11 02:44:36,464Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
INFO 2019-06-11 02:44:36,558Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-06-11 02:44:36,988Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity
INFO 2019-06-11 02:44:37,425Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature
WARNING 2019-06-11 02:44:37,425Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
WARNING 2019-06-11 02:44:37,425Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
INFO 2019-06-11 02:44:37,440Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-11 02:44:37,440Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
INFO 2019-06-11 02:44:37,452Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-11 02:44:37,457Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-11 02:44:37,461Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-11 02:44:37,465Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-11 02:44:37,465Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
INFO 2019-06-11 02:44:37,470Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-11 02:44:37,509Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-11 02:44:37,509Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
WARNING 2019-06-11 02:44:37,509Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
WARNING 2019-06-11 02:44:37,509Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
INFO 2019-06-11 02:44:37,600Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-11 02:44:37,690Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-11 02:44:37,691Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-11 02:44:37,780Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-11 02:44:37,870Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-11 02:44:37,874Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:44:38,165Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:44:38,455Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:44:38,743Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-11 02:44:38,743Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
WARNING 2019-06-11 02:44:38,743Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
WARNING 2019-06-11 02:44:38,743Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
WARNING 2019-06-11 02:44:38,743Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
INFO 2019-06-11 02:44:38,746Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable platform_battery_charge empty so skipping
INFO 2019-06-11 02:44:38,749Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable platform_battery_voltage empty so skipping
WARNING 2019-06-11 02:44:38,749Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
INFO 2019-06-11 02:44:39,042Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:44:39,341Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:44:39,635Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:44:39,637Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007.nc4
INFO 2019-06-11 02:44:40,125Z lrauvNc4ToNetcdf.py nudge_coords():593 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-11 02:44:40,127Z lrauvNc4ToNetcdf.py nudge_coords():609                  -            -            -       358    2.40              -              -
INFO 2019-06-11 02:44:40,130Z lrauvNc4ToNetcdf.py nudge_coords():631    0:        0.357    0.0001438   -0.0001688       366    2.46          -7.98         -12.73
INFO 2019-06-11 02:44:40,136Z lrauvNc4ToNetcdf.py nudge_coords():631    1:        0.339    0.0000610   -0.0000548       141    0.94          -6.74         -10.76
INFO 2019-06-11 02:44:40,142Z lrauvNc4ToNetcdf.py nudge_coords():631    2:        0.400    0.0005143   -0.0003202      3972   26.77          -1.39          -2.22
INFO 2019-06-11 02:44:40,148Z lrauvNc4ToNetcdf.py nudge_coords():631    3:        0.334   -0.0000212   -0.0000493       103    0.75          -7.68         -12.25
INFO 2019-06-11 02:44:40,154Z lrauvNc4ToNetcdf.py nudge_coords():631    4:        0.356    0.0000057   -0.0000360        41    0.27         -15.53         -24.76
INFO 2019-06-11 02:44:40,160Z lrauvNc4ToNetcdf.py nudge_coords():631    5:        0.353    0.0001870   -0.0005497       978    6.64          -9.62         -15.35
INFO 2019-06-11 02:44:40,166Z lrauvNc4ToNetcdf.py nudge_coords():631    6:        0.368    0.0001750   -0.0002922       556    3.74          -9.07         -14.49
INFO 2019-06-11 02:44:40,172Z lrauvNc4ToNetcdf.py nudge_coords():631    7:        0.358    0.0000340   -0.0001042       163    1.09         -11.08         -17.69
INFO 2019-06-11 02:44:40,178Z lrauvNc4ToNetcdf.py nudge_coords():631    8:        0.335    0.0003220   -0.0003665      5910   39.84          -1.07          -1.70
INFO 2019-06-11 02:44:40,185Z lrauvNc4ToNetcdf.py nudge_coords():631    9:        0.354   -0.0000205   -0.0002420       463    3.41          -8.23         -13.15
INFO 2019-06-11 02:44:40,190Z lrauvNc4ToNetcdf.py nudge_coords():631   10:        0.339    0.0000040   -0.0000227        41    0.27          -9.77         -15.62
INFO 2019-06-11 02:44:40,196Z lrauvNc4ToNetcdf.py nudge_coords():631   11:        0.322   -0.0000927   -0.0005698       801    5.39         -12.25         -19.60
INFO 2019-06-11 02:44:40,202Z lrauvNc4ToNetcdf.py nudge_coords():661   13:            -            -            -         4    0.02              -              -
INFO 2019-06-11 02:44:40,202Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 13539
INFO 2019-06-11 02:44:40,220Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190523T213315/20190524T010720/data.csv
INFO 2019-06-11 02:44:40,241Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database
INFO 2019-06-11 02:44:40,246Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-11 02:44:40,433Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190523T223315/201905232233_201905240007_2S_scieng.nc