INFO 2019-06-11 02:45:06,407Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4 file...
INFO 2019-06-11 02:45:06,408Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201905240327_201905240624.nc4
INFO 2019-06-11 02:45:07,406Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
INFO 2019-06-11 02:45:15,958Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes
WARNING 2019-06-11 02:45:15,967Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
INFO 2019-06-11 02:45:16,093Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-06-11 02:45:16,097Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity
INFO 2019-06-11 02:45:16,101Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature
WARNING 2019-06-11 02:45:16,101Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
WARNING 2019-06-11 02:45:16,101Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
INFO 2019-06-11 02:45:16,140Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-11 02:45:16,140Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
INFO 2019-06-11 02:45:16,157Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-11 02:45:16,161Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-11 02:45:16,166Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-11 02:45:16,170Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-11 02:45:16,171Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
INFO 2019-06-11 02:45:16,235Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-11 02:45:16,535Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-11 02:45:16,536Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
WARNING 2019-06-11 02:45:16,536Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
WARNING 2019-06-11 02:45:16,536Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
INFO 2019-06-11 02:45:16,541Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-11 02:45:16,545Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-11 02:45:16,546Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-11 02:45:16,551Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-11 02:45:16,555Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-11 02:45:16,559Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:45:17,099Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:45:17,635Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:45:18,171Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-11 02:45:18,171Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
WARNING 2019-06-11 02:45:18,171Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
WARNING 2019-06-11 02:45:18,172Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
WARNING 2019-06-11 02:45:18,172Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
INFO 2019-06-11 02:45:18,179Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-06-11 02:45:18,184Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-06-11 02:45:18,185Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
INFO 2019-06-11 02:45:18,730Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:45:19,273Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:45:19,819Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:45:19,821Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624.nc4
INFO 2019-06-11 02:45:20,598Z lrauvNc4ToNetcdf.py nudge_coords():593 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-11 02:45:20,600Z lrauvNc4ToNetcdf.py nudge_coords():609                  -            -            -         3    0.01              -              -
INFO 2019-06-11 02:45:20,605Z lrauvNc4ToNetcdf.py nudge_coords():631    0:        0.380   -0.0000012   -0.0000257        38    0.25         -12.06         -19.12
INFO 2019-06-11 02:45:20,611Z lrauvNc4ToNetcdf.py nudge_coords():631    1:        0.369    0.0001255   -0.0006515       925    6.25         -12.17         -19.32
INFO 2019-06-11 02:45:20,617Z lrauvNc4ToNetcdf.py nudge_coords():631    2:        0.365    0.0000215   -0.0004908       801    5.39         -10.63         -16.88
INFO 2019-06-11 02:45:20,623Z lrauvNc4ToNetcdf.py nudge_coords():631    3:        0.375    0.0001478   -0.0004458       816    5.49          -9.48         -15.05
INFO 2019-06-11 02:45:20,629Z lrauvNc4ToNetcdf.py nudge_coords():631    4:        0.363    0.0000075   -0.0001025       197    1.32          -9.06         -14.39
INFO 2019-06-11 02:45:20,635Z lrauvNc4ToNetcdf.py nudge_coords():631    5:        0.348    0.0000035   -0.0000430        79    0.53          -9.54         -15.15
INFO 2019-06-11 02:45:20,641Z lrauvNc4ToNetcdf.py nudge_coords():631    6:        0.369    0.0014202   -0.0005660      3172   21.37          -3.10          -4.91
INFO 2019-06-11 02:45:20,647Z lrauvNc4ToNetcdf.py nudge_coords():631    7:        0.396    0.0000881   -0.0000743       421    3.14          -2.76          -4.38
INFO 2019-06-11 02:45:20,653Z lrauvNc4ToNetcdf.py nudge_coords():631    8:        0.348    0.0005748    0.0000359      1511   10.17           0.41           0.65
INFO 2019-06-11 02:45:20,659Z lrauvNc4ToNetcdf.py nudge_coords():631    9:        0.353   -0.0000136    0.0000087       132    0.88           1.15           1.83
INFO 2019-06-11 02:45:20,665Z lrauvNc4ToNetcdf.py nudge_coords():631   10:        0.319    0.0000162   -0.0000121       101    0.67          -2.09          -3.31
INFO 2019-06-11 02:45:20,671Z lrauvNc4ToNetcdf.py nudge_coords():631   11:        0.364    0.0022161    0.0002130      6764   45.56           0.55           0.87
INFO 2019-06-11 02:45:20,678Z lrauvNc4ToNetcdf.py nudge_coords():631   12:        0.348    0.0001178    0.0000175       453    3.34           0.61           0.97
INFO 2019-06-11 02:45:20,684Z lrauvNc4ToNetcdf.py nudge_coords():631   13:        0.371    0.0001997   -0.0004011      1828   12.32          -3.80          -6.03
INFO 2019-06-11 02:45:20,690Z lrauvNc4ToNetcdf.py nudge_coords():631   14:        0.365    0.0000180    0.0000080       152    1.13           0.83           1.31
INFO 2019-06-11 02:45:20,696Z lrauvNc4ToNetcdf.py nudge_coords():631   15:        0.376    0.0003953   -0.0001613       785    5.29          -3.57          -5.64
INFO 2019-06-11 02:45:20,702Z lrauvNc4ToNetcdf.py nudge_coords():631   16:        0.377   -0.0000823    0.0000383       140    1.05           4.25           6.73
INFO 2019-06-11 02:45:20,708Z lrauvNc4ToNetcdf.py nudge_coords():631   17:        0.403    0.0002925    0.0001648       354    2.39           8.06          12.76
INFO 2019-06-11 02:45:20,714Z lrauvNc4ToNetcdf.py nudge_coords():631   18:        0.371   -0.0000152   -0.0000395       170    1.22          -3.77          -5.98
INFO 2019-06-11 02:45:20,719Z lrauvNc4ToNetcdf.py nudge_coords():631   19:        0.349    0.0002430    0.0001537       411    2.77           6.49          10.27
INFO 2019-06-11 02:45:20,725Z lrauvNc4ToNetcdf.py nudge_coords():631   20:        0.352   -0.0001102   -0.0000402       908    6.34          -0.74          -1.17
INFO 2019-06-11 02:45:20,731Z lrauvNc4ToNetcdf.py nudge_coords():631   21:        0.355    0.0000345    0.0003704       718    4.83           8.98          14.22
INFO 2019-06-11 02:45:20,737Z lrauvNc4ToNetcdf.py nudge_coords():631   22:        0.380   -0.0000654    0.0000322       123    0.82           4.58           7.25
INFO 2019-06-11 02:45:20,743Z lrauvNc4ToNetcdf.py nudge_coords():661   24:            -            -            -      4986   33.58              -              -
INFO 2019-06-11 02:45:20,744Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 25985
INFO 2019-06-11 02:45:20,760Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190524T022748/20190524T072406/data.csv
INFO 2019-06-11 02:45:20,780Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database
INFO 2019-06-11 02:45:20,786Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-11 02:45:21,349Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190523_20190524/20190524T032748/201905240327_201905240624_2S_scieng.nc