INFO 2019-06-11 02:46:29,078Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4 file...
INFO 2019-06-11 02:46:29,078Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201905310001_201905310254.nc4
INFO 2019-06-11 02:46:30,211Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
INFO 2019-06-11 02:46:38,247Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes
WARNING 2019-06-11 02:46:38,256Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
INFO 2019-06-11 02:46:38,304Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-06-11 02:46:38,306Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable sea_water_salinity empty so skipping
INFO 2019-06-11 02:46:38,307Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable sea_water_temperature empty so skipping
WARNING 2019-06-11 02:46:38,308Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
WARNING 2019-06-11 02:46:38,308Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
INFO 2019-06-11 02:46:38,348Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-11 02:46:38,348Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
INFO 2019-06-11 02:46:38,364Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-11 02:46:38,369Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-11 02:46:38,373Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-11 02:46:38,377Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-11 02:46:38,377Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
INFO 2019-06-11 02:46:38,477Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-11 02:46:38,917Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-11 02:46:38,917Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
WARNING 2019-06-11 02:46:38,918Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
WARNING 2019-06-11 02:46:38,918Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
INFO 2019-06-11 02:46:38,922Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-11 02:46:38,926Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-11 02:46:38,927Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-11 02:46:38,931Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-11 02:46:38,935Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-11 02:46:38,939Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:46:39,416Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:46:39,895Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:46:40,369Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-11 02:46:40,370Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
WARNING 2019-06-11 02:46:40,370Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
WARNING 2019-06-11 02:46:40,370Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
WARNING 2019-06-11 02:46:40,370Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
INFO 2019-06-11 02:46:40,377Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-06-11 02:46:40,383Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-06-11 02:46:40,383Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
INFO 2019-06-11 02:46:40,916Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:46:41,441Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:46:41,967Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:46:41,969Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254.nc4
INFO 2019-06-11 02:46:42,672Z lrauvNc4ToNetcdf.py nudge_coords():593 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-11 02:46:42,673Z lrauvNc4ToNetcdf.py nudge_coords():609                  -            -            -         0    0.00              -              -
INFO 2019-06-11 02:46:42,677Z lrauvNc4ToNetcdf.py nudge_coords():631    0:        0.373    0.0000477    0.0001036       556    3.74           3.25           5.13
INFO 2019-06-11 02:46:42,683Z lrauvNc4ToNetcdf.py nudge_coords():631    1:        0.359    0.0000364   -0.0000549       177    1.19          -5.44          -8.57
INFO 2019-06-11 02:46:42,689Z lrauvNc4ToNetcdf.py nudge_coords():631    2:        0.351    0.0011499    0.0000221      7435   50.09           0.05           0.08
INFO 2019-06-11 02:46:42,696Z lrauvNc4ToNetcdf.py nudge_coords():631    3:        0.338   -0.0000173    0.0000066        99    0.78           0.99           1.56
INFO 2019-06-11 02:46:42,702Z lrauvNc4ToNetcdf.py nudge_coords():631    4:        0.359    0.0010259    0.0000568      7101   47.83           0.14           0.22
INFO 2019-06-11 02:46:42,709Z lrauvNc4ToNetcdf.py nudge_coords():631    5:        0.360    0.0001566    0.0001308       419    3.17           4.85           7.64
INFO 2019-06-11 02:46:42,715Z lrauvNc4ToNetcdf.py nudge_coords():631    6:        0.373    0.0010087    0.0002824      7182   48.37           0.69           1.08
INFO 2019-06-11 02:46:42,722Z lrauvNc4ToNetcdf.py nudge_coords():661    8:            -            -            -        68    0.49              -              -
INFO 2019-06-11 02:46:42,722Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 23037
INFO 2019-06-11 02:46:42,748Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190530T230126/20190531T035424/data.csv
INFO 2019-06-11 02:46:42,772Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database
INFO 2019-06-11 02:46:42,778Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-11 02:46:42,918Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T000114/201905310001_201905310254_2S_scieng.nc