INFO 2019-06-11 02:46:43,418Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4 file...
INFO 2019-06-11 02:46:43,419Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201905310254_201905310530.nc4
INFO 2019-06-11 02:46:44,585Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
INFO 2019-06-11 02:46:52,072Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes
WARNING 2019-06-11 02:46:52,080Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
INFO 2019-06-11 02:46:52,136Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-06-11 02:46:52,138Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable sea_water_salinity empty so skipping
INFO 2019-06-11 02:46:52,139Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable sea_water_temperature empty so skipping
WARNING 2019-06-11 02:46:52,139Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
WARNING 2019-06-11 02:46:52,140Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
INFO 2019-06-11 02:46:52,183Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-11 02:46:52,183Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
INFO 2019-06-11 02:46:52,197Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-11 02:46:52,202Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-11 02:46:52,206Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-11 02:46:52,210Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-11 02:46:52,211Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
INFO 2019-06-11 02:46:52,331Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-11 02:46:52,762Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-11 02:46:52,762Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
WARNING 2019-06-11 02:46:52,762Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
WARNING 2019-06-11 02:46:52,763Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
INFO 2019-06-11 02:46:52,767Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-11 02:46:52,771Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-11 02:46:52,772Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-11 02:46:52,776Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-11 02:46:52,780Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-11 02:46:52,784Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:46:53,241Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:46:53,692Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:46:54,148Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-11 02:46:54,148Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
WARNING 2019-06-11 02:46:54,149Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
WARNING 2019-06-11 02:46:54,149Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
WARNING 2019-06-11 02:46:54,149Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
INFO 2019-06-11 02:46:54,156Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-06-11 02:46:54,162Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-06-11 02:46:54,162Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
INFO 2019-06-11 02:46:54,638Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:46:55,116Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:46:55,589Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:46:55,590Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530.nc4
INFO 2019-06-11 02:46:56,270Z lrauvNc4ToNetcdf.py nudge_coords():593 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-11 02:46:56,272Z lrauvNc4ToNetcdf.py nudge_coords():609                  -            -            -         0    0.00              -              -
INFO 2019-06-11 02:46:56,275Z lrauvNc4ToNetcdf.py nudge_coords():631    0:        0.368    0.0005731    0.0001021       859    5.78           2.08           3.27
INFO 2019-06-11 02:46:56,281Z lrauvNc4ToNetcdf.py nudge_coords():631    1:        0.362    0.0003236    0.0001690       724    4.87           4.10           6.43
INFO 2019-06-11 02:46:56,287Z lrauvNc4ToNetcdf.py nudge_coords():631    2:        0.330   -0.0001212    0.0000965       126    0.85          13.48          21.16
INFO 2019-06-11 02:46:56,293Z lrauvNc4ToNetcdf.py nudge_coords():631    3:        0.371    0.0008719    0.0000151      4835   32.57           0.05           0.09
INFO 2019-06-11 02:46:56,299Z lrauvNc4ToNetcdf.py nudge_coords():631    4:        0.358    0.0000463    0.0000606       106    0.78           9.10          14.32
INFO 2019-06-11 02:46:56,305Z lrauvNc4ToNetcdf.py nudge_coords():631    5:        0.364    0.0014233    0.0000328      4847   32.66           0.12           0.19
INFO 2019-06-11 02:46:56,312Z lrauvNc4ToNetcdf.py nudge_coords():631    6:        0.347    0.0001511   -0.0000172       464    3.44          -0.59          -0.93
INFO 2019-06-11 02:46:56,318Z lrauvNc4ToNetcdf.py nudge_coords():631    7:        0.360    0.0012725    0.0001422      4886   32.91           0.51           0.80
INFO 2019-06-11 02:46:56,324Z lrauvNc4ToNetcdf.py nudge_coords():631    8:        0.373    0.0001829   -0.0000146       373    2.96          -0.58          -0.91
INFO 2019-06-11 02:46:56,330Z lrauvNc4ToNetcdf.py nudge_coords():661   10:            -            -            -      4906   33.05              -              -
INFO 2019-06-11 02:46:56,331Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 22126
INFO 2019-06-11 02:46:56,348Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190531T015437/20190531T063003/data.csv
INFO 2019-06-11 02:46:56,381Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database
INFO 2019-06-11 02:46:56,387Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-11 02:46:56,648Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T025427/201905310254_201905310530_2S_scieng.nc