INFO 2019-06-11 02:46:58,707Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 file... INFO 2019-06-11 02:46:58,707Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201905310530_201905311527.nc4 INFO 2019-06-11 02:46:59,841Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 INFO 2019-06-11 02:47:28,154Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes WARNING 2019-06-11 02:47:28,170Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 INFO 2019-06-11 02:47:28,393Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2019-06-11 02:47:28,842Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity INFO 2019-06-11 02:47:29,292Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature WARNING 2019-06-11 02:47:29,293Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 WARNING 2019-06-11 02:47:29,293Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 INFO 2019-06-11 02:47:29,431Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle WARNING 2019-06-11 02:47:29,432Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 INFO 2019-06-11 02:47:29,466Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2019-06-11 02:47:29,471Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2019-06-11 02:47:29,477Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2019-06-11 02:47:29,482Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude WARNING 2019-06-11 02:47:29,482Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 INFO 2019-06-11 02:47:29,852Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2019-06-11 02:47:31,411Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate WARNING 2019-06-11 02:47:31,412Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 WARNING 2019-06-11 02:47:31,412Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 WARNING 2019-06-11 02:47:31,412Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 INFO 2019-06-11 02:47:31,505Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-06-11 02:47:31,598Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-06-11 02:47:31,599Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping INFO 2019-06-11 02:47:31,692Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-06-11 02:47:31,784Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-06-11 02:47:31,789Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:47:33,599Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:47:35,401Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:47:37,218Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources WARNING 2019-06-11 02:47:37,219Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 WARNING 2019-06-11 02:47:37,219Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 WARNING 2019-06-11 02:47:37,219Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 WARNING 2019-06-11 02:47:37,219Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 INFO 2019-06-11 02:47:37,229Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2019-06-11 02:47:37,235Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage WARNING 2019-06-11 02:47:37,235Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 INFO 2019-06-11 02:47:39,009Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:47:40,776Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:47:42,516Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:47:42,518Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527.nc4 INFO 2019-06-11 02:47:44,819Z lrauvNc4ToNetcdf.py nudge_coords():593 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-06-11 02:47:44,821Z lrauvNc4ToNetcdf.py nudge_coords():609 - - - 3 0.01 - - INFO 2019-06-11 02:47:44,829Z lrauvNc4ToNetcdf.py nudge_coords():631 0: 0.374 -0.0002277 0.0002987 493 3.60 9.83 15.38 INFO 2019-06-11 02:47:44,836Z lrauvNc4ToNetcdf.py nudge_coords():631 1: 0.330 0.0008802 0.0001061 4916 33.12 0.38 0.59 INFO 2019-06-11 02:47:44,842Z lrauvNc4ToNetcdf.py nudge_coords():631 2: 0.364 0.0002258 -0.0000270 372 2.94 -1.08 -1.70 INFO 2019-06-11 02:47:44,849Z lrauvNc4ToNetcdf.py nudge_coords():631 3: 0.365 0.0013212 0.0000824 4849 32.67 0.30 0.47 INFO 2019-06-11 02:47:44,855Z lrauvNc4ToNetcdf.py nudge_coords():631 4: 0.398 0.0002032 0.0000573 429 3.16 2.14 3.36 INFO 2019-06-11 02:47:44,861Z lrauvNc4ToNetcdf.py nudge_coords():631 5: 0.374 0.0012284 0.0001257 5007 33.73 0.44 0.69 INFO 2019-06-11 02:47:44,868Z lrauvNc4ToNetcdf.py nudge_coords():631 6: 0.322 0.0000312 -0.0000257 274 2.08 -1.46 -2.29 INFO 2019-06-11 02:47:44,874Z lrauvNc4ToNetcdf.py nudge_coords():631 7: 0.350 0.0012006 0.0001661 4816 32.44 0.61 0.95 INFO 2019-06-11 02:47:44,881Z lrauvNc4ToNetcdf.py nudge_coords():631 8: 0.373 0.0001203 0.0000523 435 3.40 1.82 2.85 INFO 2019-06-11 02:47:44,887Z lrauvNc4ToNetcdf.py nudge_coords():631 9: 0.358 0.0012059 -0.0001500 5002 33.69 -0.52 -0.82 INFO 2019-06-11 02:47:44,894Z lrauvNc4ToNetcdf.py nudge_coords():631 10: 0.369 0.0001345 0.0000538 291 2.28 2.78 4.37 INFO 2019-06-11 02:47:44,900Z lrauvNc4ToNetcdf.py nudge_coords():631 11: 0.360 0.0012965 0.0000056 5028 33.88 0.02 0.03 INFO 2019-06-11 02:47:44,907Z lrauvNc4ToNetcdf.py nudge_coords():631 12: 0.384 0.0000649 0.0000201 276 2.10 1.12 1.77 INFO 2019-06-11 02:47:44,913Z lrauvNc4ToNetcdf.py nudge_coords():631 13: 0.346 0.0012227 0.0002237 5416 36.48 0.72 1.14 INFO 2019-06-11 02:47:44,920Z lrauvNc4ToNetcdf.py nudge_coords():631 14: 0.364 0.0000197 0.0000084 67 0.45 2.17 3.41 INFO 2019-06-11 02:47:44,926Z lrauvNc4ToNetcdf.py nudge_coords():631 15: 0.378 0.0014388 -0.0000703 5007 33.74 -0.25 -0.39 INFO 2019-06-11 02:47:44,933Z lrauvNc4ToNetcdf.py nudge_coords():631 16: 0.354 0.0000319 0.0000104 309 2.36 0.52 0.81 INFO 2019-06-11 02:47:44,939Z lrauvNc4ToNetcdf.py nudge_coords():631 17: 0.357 0.0010556 0.0001375 4901 33.02 0.49 0.77 INFO 2019-06-11 02:47:44,946Z lrauvNc4ToNetcdf.py nudge_coords():631 18: 0.303 0.0000704 -0.0000262 369 2.84 -1.09 -1.71 INFO 2019-06-11 02:47:44,952Z lrauvNc4ToNetcdf.py nudge_coords():631 19: 0.359 0.0012534 0.0000343 5003 33.71 0.12 0.19 INFO 2019-06-11 02:47:44,959Z lrauvNc4ToNetcdf.py nudge_coords():631 20: 0.380 -0.0001186 0.0000831 270 2.10 4.69 7.34 INFO 2019-06-11 02:47:44,965Z lrauvNc4ToNetcdf.py nudge_coords():631 21: 0.358 0.0012579 0.0001641 5124 34.52 0.56 0.88 INFO 2019-06-11 02:47:44,972Z lrauvNc4ToNetcdf.py nudge_coords():631 22: 0.373 0.0000530 0.0000022 189 1.45 0.18 0.29 INFO 2019-06-11 02:47:44,978Z lrauvNc4ToNetcdf.py nudge_coords():631 23: 0.359 0.0016187 0.0000688 4841 32.61 0.25 0.39 INFO 2019-06-11 02:47:44,985Z lrauvNc4ToNetcdf.py nudge_coords():631 24: 0.377 0.0000526 -0.0000053 541 4.06 -0.15 -0.24 INFO 2019-06-11 02:47:44,991Z lrauvNc4ToNetcdf.py nudge_coords():631 25: 0.376 0.0014485 0.0001843 5119 34.49 0.63 0.99 INFO 2019-06-11 02:47:44,998Z lrauvNc4ToNetcdf.py nudge_coords():631 26: 0.373 0.0000779 0.0000387 250 1.77 2.59 4.05 INFO 2019-06-11 02:47:45,004Z lrauvNc4ToNetcdf.py nudge_coords():631 27: 0.358 -0.0000222 0.0000097 43 0.28 4.07 6.36 INFO 2019-06-11 02:47:45,010Z lrauvNc4ToNetcdf.py nudge_coords():631 28: 0.369 0.0001738 0.0001391 853 5.74 2.87 4.49 INFO 2019-06-11 02:47:45,017Z lrauvNc4ToNetcdf.py nudge_coords():631 29: 0.350 0.0001091 0.0000588 397 2.67 2.61 4.08 INFO 2019-06-11 02:47:45,023Z lrauvNc4ToNetcdf.py nudge_coords():631 30: 0.401 -0.0001446 0.0001146 427 2.87 4.74 7.40 INFO 2019-06-11 02:47:45,029Z lrauvNc4ToNetcdf.py nudge_coords():631 31: 0.364 0.0007134 0.0003214 5373 36.20 1.05 1.65 INFO 2019-06-11 02:47:45,036Z lrauvNc4ToNetcdf.py nudge_coords():631 32: 0.364 -0.0000256 0.0000310 145 0.98 3.73 5.84 INFO 2019-06-11 02:47:45,042Z lrauvNc4ToNetcdf.py nudge_coords():631 33: 0.366 0.0000422 0.0000104 112 0.75 1.64 2.56 INFO 2019-06-11 02:47:45,049Z lrauvNc4ToNetcdf.py nudge_coords():631 34: 0.360 -0.0001522 0.0001702 601 4.04 4.99 7.80 INFO 2019-06-11 02:47:45,055Z lrauvNc4ToNetcdf.py nudge_coords():631 35: 0.427 0.0024371 0.0027823 4744 31.95 10.21 16.13 INFO 2019-06-11 02:47:45,062Z lrauvNc4ToNetcdf.py nudge_coords():631 36: 0.328 -0.0004385 0.0001898 449 3.46 6.44 10.18 INFO 2019-06-11 02:47:45,069Z lrauvNc4ToNetcdf.py nudge_coords():631 37: 0.398 0.0028740 0.0023904 4777 32.18 8.62 13.77 INFO 2019-06-11 02:47:45,077Z lrauvNc4ToNetcdf.py nudge_coords():631 38: 0.280 -0.0006498 0.0002412 365 3.00 9.32 14.89 INFO 2019-06-11 02:47:45,084Z lrauvNc4ToNetcdf.py nudge_coords():661 40: - - - 35 0.23 - - INFO 2019-06-11 02:47:45,084Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 87915 INFO 2019-06-11 02:47:45,103Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190531T043003/20190531T162722/data.csv INFO 2019-06-11 02:47:45,125Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database INFO 2019-06-11 02:47:45,134Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2019-06-11 02:47:45,497Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T053003/201905310530_201905311527_2S_scieng.nc