INFO 2019-06-11 02:47:46,042Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 file... INFO 2019-06-11 02:47:46,043Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201905311527_201905311807.nc4 INFO 2019-06-11 02:47:47,684Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 INFO 2019-06-11 02:47:55,449Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes WARNING 2019-06-11 02:47:55,458Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 INFO 2019-06-11 02:47:55,486Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2019-06-11 02:47:56,181Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity INFO 2019-06-11 02:47:56,880Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature WARNING 2019-06-11 02:47:56,880Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 WARNING 2019-06-11 02:47:56,880Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 INFO 2019-06-11 02:47:56,930Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle WARNING 2019-06-11 02:47:56,930Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 INFO 2019-06-11 02:47:56,938Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2019-06-11 02:47:56,942Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2019-06-11 02:47:56,947Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2019-06-11 02:47:56,951Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude WARNING 2019-06-11 02:47:56,951Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 INFO 2019-06-11 02:47:57,024Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2019-06-11 02:47:57,366Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate WARNING 2019-06-11 02:47:57,366Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 WARNING 2019-06-11 02:47:57,366Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 WARNING 2019-06-11 02:47:57,366Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 INFO 2019-06-11 02:47:57,508Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-06-11 02:47:57,650Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-06-11 02:47:57,651Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping INFO 2019-06-11 02:47:57,796Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-06-11 02:47:57,938Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-06-11 02:47:57,942Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:47:58,427Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:47:58,917Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:47:59,405Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources WARNING 2019-06-11 02:47:59,405Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 WARNING 2019-06-11 02:47:59,406Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 WARNING 2019-06-11 02:47:59,406Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 WARNING 2019-06-11 02:47:59,406Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 INFO 2019-06-11 02:47:59,413Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2019-06-11 02:47:59,419Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage WARNING 2019-06-11 02:47:59,419Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 INFO 2019-06-11 02:47:59,908Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:48:00,395Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:48:00,879Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:48:00,880Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807.nc4 INFO 2019-06-11 02:48:01,605Z lrauvNc4ToNetcdf.py nudge_coords():593 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-06-11 02:48:01,608Z lrauvNc4ToNetcdf.py nudge_coords():609 - - - 4816 32.44 - - INFO 2019-06-11 02:48:01,611Z lrauvNc4ToNetcdf.py nudge_coords():631 0: 0.371 -0.0004367 0.0001183 454 3.47 3.90 6.31 INFO 2019-06-11 02:48:01,617Z lrauvNc4ToNetcdf.py nudge_coords():631 1: 0.366 0.0011524 -0.0001517 5161 34.76 -0.49 -0.81 INFO 2019-06-11 02:48:01,624Z lrauvNc4ToNetcdf.py nudge_coords():631 2: 0.342 -0.0000665 0.0000872 86 0.69 14.28 23.46 INFO 2019-06-11 02:48:01,630Z lrauvNc4ToNetcdf.py nudge_coords():631 3: 0.372 0.0010267 0.0000729 4744 31.95 0.25 0.42 INFO 2019-06-11 02:48:01,636Z lrauvNc4ToNetcdf.py nudge_coords():631 4: 0.336 -0.0000500 -0.0001663 191 1.46 -12.71 -21.18 INFO 2019-06-11 02:48:01,642Z lrauvNc4ToNetcdf.py nudge_coords():631 5: 0.395 -0.0000187 0.0000472 254 1.87 2.81 4.68 INFO 2019-06-11 02:48:01,648Z lrauvNc4ToNetcdf.py nudge_coords():631 6: 0.364 0.0017022 -0.0003763 2235 15.05 -2.78 -4.63 INFO 2019-06-11 02:48:01,655Z lrauvNc4ToNetcdf.py nudge_coords():631 7: 0.352 0.0000225 0.0000195 38 0.25 8.68 14.48 INFO 2019-06-11 02:48:01,660Z lrauvNc4ToNetcdf.py nudge_coords():631 8: 0.352 0.0012728 0.0002483 1044 7.30 3.78 6.30 INFO 2019-06-11 02:48:01,667Z lrauvNc4ToNetcdf.py nudge_coords():631 9: 0.356 0.0010165 0.0000923 856 5.86 1.75 2.92 INFO 2019-06-11 02:48:01,673Z lrauvNc4ToNetcdf.py nudge_coords():631 10: 0.358 0.0010905 0.0000177 956 6.57 0.30 0.50 INFO 2019-06-11 02:48:01,679Z lrauvNc4ToNetcdf.py nudge_coords():631 11: 0.363 0.0010555 -0.0000475 877 6.00 -0.88 -1.47 INFO 2019-06-11 02:48:01,685Z lrauvNc4ToNetcdf.py nudge_coords():631 12: 0.362 0.0013778 -0.0001663 892 6.10 -3.03 -5.05 INFO 2019-06-11 02:48:01,691Z lrauvNc4ToNetcdf.py nudge_coords():631 13: 0.371 0.0308528 0.0204943 939 6.46 362.33 588.02 INFO 2019-06-11 02:48:01,697Z lrauvNc4ToNetcdf.py nudge_coords():661 15: - - - 42 0.28 - - INFO 2019-06-11 02:48:01,697Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 23585 INFO 2019-06-11 02:48:01,718Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190531T142722/20190531T190758/data.csv INFO 2019-06-11 02:48:01,744Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database INFO 2019-06-11 02:48:01,749Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2019-06-11 02:48:02,009Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190530_20190531/20190531T152722/201905311527_201905311807_2S_scieng.nc