INFO 2019-06-11 02:54:47,672Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 file... INFO 2019-06-11 02:54:47,673Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201906070630_201906071520.nc4 INFO 2019-06-11 02:54:48,752Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 INFO 2019-06-11 02:55:13,819Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes WARNING 2019-06-11 02:55:13,834Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 INFO 2019-06-11 02:55:13,918Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position WARNING 2019-06-11 02:55:13,918Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 WARNING 2019-06-11 02:55:13,919Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 WARNING 2019-06-11 02:55:13,919Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 WARNING 2019-06-11 02:55:13,919Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 INFO 2019-06-11 02:55:14,045Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle WARNING 2019-06-11 02:55:14,045Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 INFO 2019-06-11 02:55:14,071Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2019-06-11 02:55:14,077Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2019-06-11 02:55:14,082Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2019-06-11 02:55:14,087Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude WARNING 2019-06-11 02:55:14,087Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 INFO 2019-06-11 02:55:14,253Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2019-06-11 02:55:15,634Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate WARNING 2019-06-11 02:55:15,634Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 WARNING 2019-06-11 02:55:15,634Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 WARNING 2019-06-11 02:55:15,635Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 INFO 2019-06-11 02:55:16,229Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-06-11 02:55:16,822Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-06-11 02:55:16,824Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping INFO 2019-06-11 02:55:17,416Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-06-11 02:55:18,003Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-06-11 02:55:18,008Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:55:19,589Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:55:21,179Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2019-06-11 02:55:22,764Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources WARNING 2019-06-11 02:55:22,764Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 WARNING 2019-06-11 02:55:22,764Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 WARNING 2019-06-11 02:55:22,765Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 WARNING 2019-06-11 02:55:22,765Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 INFO 2019-06-11 02:55:22,774Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2019-06-11 02:55:22,780Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage WARNING 2019-06-11 02:55:22,780Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 INFO 2019-06-11 02:55:24,348Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:55:25,903Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:55:27,474Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-11 02:55:27,476Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520.nc4 INFO 2019-06-11 02:55:29,519Z lrauvNc4ToNetcdf.py nudge_coords():593 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-06-11 02:55:29,521Z lrauvNc4ToNetcdf.py nudge_coords():609 - - - 97 0.65 - - INFO 2019-06-11 02:55:29,530Z lrauvNc4ToNetcdf.py nudge_coords():631 0: 0.379 -0.0024076 0.0003501 1378 9.27 -6.91 6.99 INFO 2019-06-11 02:55:29,537Z lrauvNc4ToNetcdf.py nudge_coords():631 1: 0.365 -0.0009792 0.0001407 542 3.65 -7.06 7.15 INFO 2019-06-11 02:55:29,543Z lrauvNc4ToNetcdf.py nudge_coords():631 2: 0.388 -0.0075515 -0.0007288 5518 37.16 3.59 -3.63 INFO 2019-06-11 02:55:29,550Z lrauvNc4ToNetcdf.py nudge_coords():631 3: 0.307 -0.0006035 0.0000783 289 2.09 -6.85 6.94 INFO 2019-06-11 02:55:29,556Z lrauvNc4ToNetcdf.py nudge_coords():631 4: 0.351 -0.0053128 -0.0020841 5375 36.20 10.53 -10.67 INFO 2019-06-11 02:55:29,562Z lrauvNc4ToNetcdf.py nudge_coords():631 5: 0.359 -0.0008420 0.0000525 445 3.32 -2.90 2.93 INFO 2019-06-11 02:55:29,569Z lrauvNc4ToNetcdf.py nudge_coords():631 6: 0.353 -0.0049912 -0.0008176 5194 34.98 4.27 -4.33 INFO 2019-06-11 02:55:29,575Z lrauvNc4ToNetcdf.py nudge_coords():631 7: 0.359 -0.0007855 0.0001283 465 3.46 -6.79 6.88 INFO 2019-06-11 02:55:29,582Z lrauvNc4ToNetcdf.py nudge_coords():631 8: 0.386 -0.0034302 -0.0014363 5532 37.26 7.05 -7.14 INFO 2019-06-11 02:55:29,588Z lrauvNc4ToNetcdf.py nudge_coords():631 9: 0.360 -0.0005370 0.0001535 386 2.78 -10.11 10.24 INFO 2019-06-11 02:55:29,595Z lrauvNc4ToNetcdf.py nudge_coords():631 10: 0.370 -0.0045217 0.0003894 5285 35.59 -2.00 2.03 INFO 2019-06-11 02:55:29,601Z lrauvNc4ToNetcdf.py nudge_coords():631 11: 0.323 -0.0005198 0.0001802 355 2.68 -12.30 12.47 INFO 2019-06-11 02:55:29,607Z lrauvNc4ToNetcdf.py nudge_coords():631 12: 0.371 -0.0039175 -0.0010202 5910 39.81 4.69 -4.75 INFO 2019-06-11 02:55:29,614Z lrauvNc4ToNetcdf.py nudge_coords():631 13: 0.320 -0.0000560 0.0000278 57 0.38 -13.23 13.40 INFO 2019-06-11 02:55:29,620Z lrauvNc4ToNetcdf.py nudge_coords():631 14: 0.353 -0.0033072 0.0012427 5914 39.83 -5.70 5.78 INFO 2019-06-11 02:55:29,627Z lrauvNc4ToNetcdf.py nudge_coords():631 15: 0.365 -0.0000273 0.0000422 59 0.40 -19.42 19.69 INFO 2019-06-11 02:55:29,635Z lrauvNc4ToNetcdf.py nudge_coords():631 16: 0.361 -0.0027519 -0.0007756 5602 37.73 3.76 -3.81 INFO 2019-06-11 02:55:29,642Z lrauvNc4ToNetcdf.py nudge_coords():631 17: 0.361 -0.0000288 0.0000383 58 0.42 -16.82 17.04 INFO 2019-06-11 02:55:29,648Z lrauvNc4ToNetcdf.py nudge_coords():631 18: 0.352 -0.0016996 0.0001395 5256 35.40 -0.72 0.73 INFO 2019-06-11 02:55:29,655Z lrauvNc4ToNetcdf.py nudge_coords():631 19: 0.344 -0.0001848 0.0002767 384 2.85 -17.75 18.00 INFO 2019-06-11 02:55:29,661Z lrauvNc4ToNetcdf.py nudge_coords():631 20: 0.370 -0.0021780 -0.0016520 5272 35.52 8.51 -8.62 INFO 2019-06-11 02:55:29,667Z lrauvNc4ToNetcdf.py nudge_coords():631 21: 0.328 0.0000253 0.0001842 384 2.85 -11.84 11.99 INFO 2019-06-11 02:55:29,674Z lrauvNc4ToNetcdf.py nudge_coords():631 22: 0.368 -0.0010691 -0.0001394 5447 36.69 0.69 -0.70 INFO 2019-06-11 02:55:29,680Z lrauvNc4ToNetcdf.py nudge_coords():631 23: 0.365 0.0001501 0.0006269 852 5.91 -19.40 19.67 INFO 2019-06-11 02:55:29,687Z lrauvNc4ToNetcdf.py nudge_coords():631 24: 0.361 0.0000197 0.0000990 159 1.07 -16.94 17.18 INFO 2019-06-11 02:55:29,693Z lrauvNc4ToNetcdf.py nudge_coords():631 25: 0.341 -0.0010355 -0.0020327 5634 37.95 9.80 -9.93 INFO 2019-06-11 02:55:29,700Z lrauvNc4ToNetcdf.py nudge_coords():631 26: 0.366 -0.0000397 0.0001470 244 1.70 -15.86 16.07 INFO 2019-06-11 02:55:29,706Z lrauvNc4ToNetcdf.py nudge_coords():631 27: 0.359 -0.0008025 -0.0014546 5003 33.70 7.91 -8.00 INFO 2019-06-11 02:55:29,713Z lrauvNc4ToNetcdf.py nudge_coords():631 28: 0.366 0.0000273 0.0000163 38 0.25 -12.03 12.16 INFO 2019-06-11 02:55:29,720Z lrauvNc4ToNetcdf.py nudge_coords():631 29: 0.344 0.0002797 0.0004660 1126 7.79 -10.96 11.08 INFO 2019-06-11 02:55:29,726Z lrauvNc4ToNetcdf.py nudge_coords():661 31: - - - 63 0.42 - - INFO 2019-06-11 02:55:29,726Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 78226 INFO 2019-06-11 02:55:29,743Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190607T053020/20190607T162016/data.csv INFO 2019-06-11 02:55:29,769Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database INFO 2019-06-11 02:55:29,778Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2019-06-11 02:55:30,281Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T063020/201906070630_201906071520_2S_scieng.nc