INFO 2019-06-11 02:55:30,777Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4 file...
INFO 2019-06-11 02:55:30,778Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201906071522_201906071800.nc4
INFO 2019-06-11 02:55:32,000Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
INFO 2019-06-11 02:55:39,642Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes
WARNING 2019-06-11 02:55:39,650Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
INFO 2019-06-11 02:55:39,693Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
WARNING 2019-06-11 02:55:39,693Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
WARNING 2019-06-11 02:55:39,694Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
WARNING 2019-06-11 02:55:39,694Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
WARNING 2019-06-11 02:55:39,694Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
INFO 2019-06-11 02:55:39,739Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-11 02:55:39,739Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
INFO 2019-06-11 02:55:39,765Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-11 02:55:39,769Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-11 02:55:39,774Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-11 02:55:39,778Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-11 02:55:39,778Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
INFO 2019-06-11 02:55:39,899Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-11 02:55:40,261Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-11 02:55:40,261Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
WARNING 2019-06-11 02:55:40,261Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
WARNING 2019-06-11 02:55:40,261Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
INFO 2019-06-11 02:55:40,266Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-11 02:55:40,269Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-11 02:55:40,271Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-11 02:55:40,275Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-11 02:55:40,278Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-11 02:55:40,283Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:55:40,760Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:55:41,242Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:55:41,719Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-11 02:55:41,719Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
WARNING 2019-06-11 02:55:41,719Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
WARNING 2019-06-11 02:55:41,719Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
WARNING 2019-06-11 02:55:41,719Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
INFO 2019-06-11 02:55:41,726Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-06-11 02:55:41,731Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-06-11 02:55:41,732Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
INFO 2019-06-11 02:55:42,216Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:55:42,695Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:55:43,186Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:55:43,188Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800.nc4
INFO 2019-06-11 02:55:43,881Z lrauvNc4ToNetcdf.py nudge_coords():593 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-11 02:55:43,883Z lrauvNc4ToNetcdf.py nudge_coords():609                  -            -            -         0    0.00              -              -
INFO 2019-06-11 02:55:43,886Z lrauvNc4ToNetcdf.py nudge_coords():631    0:        0.401    0.0000672    0.0000922       205    1.50         -11.30          11.42
INFO 2019-06-11 02:55:43,892Z lrauvNc4ToNetcdf.py nudge_coords():631    1:        0.373    0.0002335    0.0002738       680    4.57         -10.98          11.10
INFO 2019-06-11 02:55:43,898Z lrauvNc4ToNetcdf.py nudge_coords():631    2:        0.350    0.0000510    0.0000530       156    1.05          -9.29           9.39
INFO 2019-06-11 02:55:43,904Z lrauvNc4ToNetcdf.py nudge_coords():631    3:        0.370   -0.0020467    0.0004162      3046   20.50          -3.72           3.76
INFO 2019-06-11 02:55:43,911Z lrauvNc4ToNetcdf.py nudge_coords():631    4:        0.356    0.0002272    0.0001035       801    5.39          -3.52           3.56
INFO 2019-06-11 02:55:43,917Z lrauvNc4ToNetcdf.py nudge_coords():631    5:        0.372    0.0000727    0.0000235       268    1.80          -2.39           2.42
INFO 2019-06-11 02:55:43,923Z lrauvNc4ToNetcdf.py nudge_coords():631    6:        0.363    0.0000203    0.0000168       123    0.82          -3.76           3.80
INFO 2019-06-11 02:55:43,929Z lrauvNc4ToNetcdf.py nudge_coords():631    7:        0.365    0.0003849   -0.0016000      3793   25.56          11.47         -11.60
INFO 2019-06-11 02:55:43,935Z lrauvNc4ToNetcdf.py nudge_coords():631    8:        0.369   -0.0000293    0.0000128       117    0.85          -2.77           2.80
INFO 2019-06-11 02:55:43,941Z lrauvNc4ToNetcdf.py nudge_coords():631    9:        0.359    0.0006866   -0.0024625      3924   26.43          17.07         -17.26
INFO 2019-06-11 02:55:43,948Z lrauvNc4ToNetcdf.py nudge_coords():631   10:        0.362    0.0000162    0.0000123        78    0.55          -4.11           4.15
INFO 2019-06-11 02:55:43,954Z lrauvNc4ToNetcdf.py nudge_coords():631   11:        0.393    0.0000285    0.0001000       754    5.19          -3.53           3.57
INFO 2019-06-11 02:55:43,960Z lrauvNc4ToNetcdf.py nudge_coords():631   12:        0.318    0.0000087    0.0000470       155    1.04          -8.29           8.39
INFO 2019-06-11 02:55:43,966Z lrauvNc4ToNetcdf.py nudge_coords():631   13:        0.347    0.0008370   -0.0011430      3645   24.58           8.52          -8.62
INFO 2019-06-11 02:55:43,972Z lrauvNc4ToNetcdf.py nudge_coords():631   14:        0.353    0.0000180    0.0000453       540    3.98          -2.09           2.11
INFO 2019-06-11 02:55:43,978Z lrauvNc4ToNetcdf.py nudge_coords():631   15:        0.337    0.0004952   -0.0024949      3792   25.55          17.89         -18.10
INFO 2019-06-11 02:55:43,984Z lrauvNc4ToNetcdf.py nudge_coords():631   16:        0.397    0.0000143   -0.0000258        38    0.25          18.97         -19.18
INFO 2019-06-11 02:55:43,990Z lrauvNc4ToNetcdf.py nudge_coords():661   18:            -            -            -       924    6.40              -              -
INFO 2019-06-11 02:55:43,990Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 23039
INFO 2019-06-11 02:55:44,006Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190607T142219/20190607T190038/data.csv
INFO 2019-06-11 02:55:44,049Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database
INFO 2019-06-11 02:55:44,055Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-11 02:55:44,514Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190607T152206/201906071522_201906071800_2S_scieng.nc