INFO 2019-06-11 02:57:33,714Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4 file...
INFO 2019-06-11 02:57:33,715Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201906081614_201906081824.nc4
INFO 2019-06-11 02:57:34,700Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
INFO 2019-06-11 02:57:40,984Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes
WARNING 2019-06-11 02:57:40,992Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
INFO 2019-06-11 02:57:41,036Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
WARNING 2019-06-11 02:57:41,036Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
WARNING 2019-06-11 02:57:41,036Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
WARNING 2019-06-11 02:57:41,036Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
WARNING 2019-06-11 02:57:41,037Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
INFO 2019-06-11 02:57:41,080Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-11 02:57:41,080Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
INFO 2019-06-11 02:57:41,085Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-11 02:57:41,089Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-11 02:57:41,093Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-11 02:57:41,098Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-11 02:57:41,098Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
INFO 2019-06-11 02:57:41,167Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-11 02:57:41,393Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-11 02:57:41,393Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
WARNING 2019-06-11 02:57:41,393Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
WARNING 2019-06-11 02:57:41,394Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
INFO 2019-06-11 02:57:41,510Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-11 02:57:41,627Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-11 02:57:41,628Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-11 02:57:41,744Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-11 02:57:41,860Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-11 02:57:41,864Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:57:42,265Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:57:42,662Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-11 02:57:43,061Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-11 02:57:43,061Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
WARNING 2019-06-11 02:57:43,061Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
WARNING 2019-06-11 02:57:43,061Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
WARNING 2019-06-11 02:57:43,062Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
INFO 2019-06-11 02:57:43,068Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-06-11 02:57:43,073Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-06-11 02:57:43,074Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
INFO 2019-06-11 02:57:43,477Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:57:43,874Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:57:44,266Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-11 02:57:44,267Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824.nc4
INFO 2019-06-11 02:57:44,864Z lrauvNc4ToNetcdf.py nudge_coords():593 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-11 02:57:44,866Z lrauvNc4ToNetcdf.py nudge_coords():609                  -            -            -         3    0.01              -              -
INFO 2019-06-11 02:57:44,869Z lrauvNc4ToNetcdf.py nudge_coords():631    0:        0.359   -0.0011705    0.0002777      1770   12.35          -4.11           4.17
INFO 2019-06-11 02:57:44,875Z lrauvNc4ToNetcdf.py nudge_coords():631    1:        0.353   -0.0012701   -0.0009282      3294   22.18           7.65          -7.76
INFO 2019-06-11 02:57:44,882Z lrauvNc4ToNetcdf.py nudge_coords():631    2:        0.373   -0.0000167   -0.0000163        38    0.25          11.98         -12.14
INFO 2019-06-11 02:57:44,888Z lrauvNc4ToNetcdf.py nudge_coords():631    3:        0.365   -0.0007012    0.0000220      1137    7.79          -0.52           0.52
INFO 2019-06-11 02:57:44,894Z lrauvNc4ToNetcdf.py nudge_coords():631    4:        0.342   -0.0001027    0.0000056       156    1.05          -0.97           0.98
INFO 2019-06-11 02:57:44,900Z lrauvNc4ToNetcdf.py nudge_coords():631    5:        0.369   -0.0002305    0.0000362       360    2.42          -2.73           2.77
INFO 2019-06-11 02:57:44,906Z lrauvNc4ToNetcdf.py nudge_coords():631    6:        0.334   -0.0004007   -0.0014288      1492   10.04          26.04         -26.37
INFO 2019-06-11 02:57:44,914Z lrauvNc4ToNetcdf.py nudge_coords():631    7:        0.377   -0.0001490    0.0000885       127    0.98         -16.61          16.82
INFO 2019-06-11 02:57:44,920Z lrauvNc4ToNetcdf.py nudge_coords():631    8:        0.378   -0.0005130   -0.0007860      1651   11.11          12.95         -13.11
INFO 2019-06-11 02:57:44,927Z lrauvNc4ToNetcdf.py nudge_coords():631    9:        0.359   -0.0000052    0.0000027        60    0.40          -1.25           1.27
INFO 2019-06-11 02:57:44,933Z lrauvNc4ToNetcdf.py nudge_coords():631   10:        0.359   -0.0002146    0.0000667      1491   10.03          -1.22           1.23
INFO 2019-06-11 02:57:44,939Z lrauvNc4ToNetcdf.py nudge_coords():631   11:        0.360    0.0000645    0.0001313       123    0.85         -28.19          28.52
INFO 2019-06-11 02:57:44,945Z lrauvNc4ToNetcdf.py nudge_coords():631   12:        0.352   -0.0003596    0.0000654      1491   10.03          -1.19           1.21
INFO 2019-06-11 02:57:44,951Z lrauvNc4ToNetcdf.py nudge_coords():631   13:        0.353   -0.0000373   -0.0000350       201    1.44           4.47          -4.51
INFO 2019-06-11 02:57:44,957Z lrauvNc4ToNetcdf.py nudge_coords():631   14:        0.353   -0.0004147   -0.0000015      1491   10.03           0.03          -0.03
INFO 2019-06-11 02:57:44,963Z lrauvNc4ToNetcdf.py nudge_coords():631   15:        0.357   -0.0000429    0.0000218       290    2.06          -1.93           1.95
INFO 2019-06-11 02:57:44,969Z lrauvNc4ToNetcdf.py nudge_coords():631   16:        0.353    0.0000132    0.0000218       109    0.73          -5.50           5.56
INFO 2019-06-11 02:57:44,975Z lrauvNc4ToNetcdf.py nudge_coords():631   17:        0.357    0.0000342    0.0001332       801    5.39          -4.53           4.58
INFO 2019-06-11 02:57:44,981Z lrauvNc4ToNetcdf.py nudge_coords():631   18:        0.350   -0.0000582    0.0000047       802    5.40          -0.16           0.16
INFO 2019-06-11 02:57:44,987Z lrauvNc4ToNetcdf.py nudge_coords():631   19:        0.370    0.0000040    0.0000075       801    5.39          -0.26           0.26
INFO 2019-06-11 02:57:44,993Z lrauvNc4ToNetcdf.py nudge_coords():631   20:        0.355   -0.0000767   -0.0000228       802    5.39           0.78          -0.78
INFO 2019-06-11 02:57:44,999Z lrauvNc4ToNetcdf.py nudge_coords():661   22:            -            -            -       535    3.60              -              -
INFO 2019-06-11 02:57:44,999Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 19022
INFO 2019-06-11 02:57:45,019Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190608T151456/20190608T192400/data.csv
INFO 2019-06-11 02:57:45,040Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database
INFO 2019-06-11 02:57:45,045Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-11 02:57:45,607Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190603_20190608/20190608T161456/201906081614_201906081824_2S_scieng.nc