INFO 2019-06-18 00:06:58,195Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4 file...
INFO 2019-06-18 00:06:58,196Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201906110527_201906110612.nc4
INFO 2019-06-18 00:07:02,387Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
INFO 2019-06-18 00:07:04,534Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes
WARNING 2019-06-18 00:07:04,539Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
INFO 2019-06-18 00:07:04,557Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
WARNING 2019-06-18 00:07:04,557Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
WARNING 2019-06-18 00:07:04,558Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
WARNING 2019-06-18 00:07:04,558Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
WARNING 2019-06-18 00:07:04,558Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
INFO 2019-06-18 00:07:04,569Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-18 00:07:04,569Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
INFO 2019-06-18 00:07:04,575Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-18 00:07:04,579Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-18 00:07:04,583Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-18 00:07:04,587Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-18 00:07:04,587Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
INFO 2019-06-18 00:07:04,606Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-18 00:07:04,679Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-18 00:07:04,680Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
WARNING 2019-06-18 00:07:04,680Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
WARNING 2019-06-18 00:07:04,680Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
INFO 2019-06-18 00:07:04,682Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable concentration_of_chromophoric_dissolved_organic_matter_in_sea_water empty so skipping
INFO 2019-06-18 00:07:04,683Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2019-06-18 00:07:04,684Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-18 00:07:04,686Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable VolumeScatCoeff117deg700nm empty so skipping
INFO 2019-06-18 00:07:04,687Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable mass_concentration_of_petroleum_hydrocarbons_in_sea_water empty so skipping
INFO 2019-06-18 00:07:04,691Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-18 00:07:04,820Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-18 00:07:04,950Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-18 00:07:05,079Z lrauvNc4ToNetcdf.py processResampleNc4File():1013 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-18 00:07:05,080Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
WARNING 2019-06-18 00:07:05,080Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
WARNING 2019-06-18 00:07:05,080Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
WARNING 2019-06-18 00:07:05,080Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
INFO 2019-06-18 00:07:05,083Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable platform_battery_charge empty so skipping
INFO 2019-06-18 00:07:05,086Z lrauvNc4ToNetcdf.py processResampleNc4File():976 Variable platform_battery_voltage empty so skipping
WARNING 2019-06-18 00:07:05,086Z lrauvNc4ToNetcdf.py processResampleNc4File():1015 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
INFO 2019-06-18 00:07:05,227Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-18 00:07:05,368Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-18 00:07:05,506Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-18 00:07:05,507Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612.nc4
INFO 2019-06-18 00:07:05,796Z lrauvNc4ToNetcdf.py nudge_coords():593 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-18 00:07:05,798Z lrauvNc4ToNetcdf.py nudge_coords():609                  -            -            -      1053    7.08              -              -
INFO 2019-06-18 00:07:05,800Z lrauvNc4ToNetcdf.py nudge_coords():631    0:        0.369   -0.0001508   -0.0000073       285    1.91           0.70          -0.71
INFO 2019-06-18 00:07:05,806Z lrauvNc4ToNetcdf.py nudge_coords():631    1:        0.369    0.0001612   -0.0003062      3589   24.18           2.32          -2.35
INFO 2019-06-18 00:07:05,813Z lrauvNc4ToNetcdf.py nudge_coords():631    2:        0.388   -0.0008325    0.0000455      1176    7.91          -1.05           1.07
INFO 2019-06-18 00:07:05,819Z lrauvNc4ToNetcdf.py nudge_coords():661    4:            -            -            -       523    3.51              -              -
INFO 2019-06-18 00:07:05,819Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 5573
INFO 2019-06-18 00:07:05,835Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190611T042729/20190611T071207/data.csv
INFO 2019-06-18 00:07:05,853Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database
INFO 2019-06-18 00:07:05,858Z lrauvNc4ToNetcdf.py processResampleNc4File():1066 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-18 00:07:05,944Z lrauvNc4ToNetcdf.py processResampleNc4File():1069 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T052729/201906110527_201906110612_2S_scieng.nc