INFO 2019-06-19 15:20:42,676Z lrauvNc4ToNetcdf.py processResampleNc4File():930 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4 file...
INFO 2019-06-19 15:20:42,677Z lrauvNc4ToNetcdf.py processResampleNc4File():931 After copying to /tmp/201906111454_201906111656.nc4
INFO 2019-06-19 15:20:43,472Z lrauvNc4ToNetcdf.py processResampleNc4File():933 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
INFO 2019-06-19 15:20:49,032Z lrauvNc4ToNetcdf.py processResampleNc4File():938 Creating t variable of the time indexes
WARNING 2019-06-19 15:21:12,231Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
INFO 2019-06-19 15:21:12,285Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
WARNING 2019-06-19 15:21:12,285Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
WARNING 2019-06-19 15:21:12,285Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
WARNING 2019-06-19 15:21:12,286Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
WARNING 2019-06-19 15:21:12,286Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
INFO 2019-06-19 15:21:12,318Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-19 15:21:12,319Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
INFO 2019-06-19 15:21:12,331Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-19 15:21:12,335Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-19 15:21:12,340Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-19 15:21:12,344Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-19 15:21:12,344Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
INFO 2019-06-19 15:21:12,430Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-19 15:21:12,703Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-19 15:21:12,703Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
WARNING 2019-06-19 15:21:12,703Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
WARNING 2019-06-19 15:21:12,704Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
INFO 2019-06-19 15:21:12,708Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-19 15:21:12,711Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-19 15:21:12,720Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-19 15:21:12,724Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-19 15:21:12,728Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-19 15:21:12,731Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-19 15:21:13,084Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-19 15:21:13,431Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-19 15:21:13,780Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-19 15:21:13,780Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
WARNING 2019-06-19 15:21:13,781Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
WARNING 2019-06-19 15:21:13,781Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
WARNING 2019-06-19 15:21:13,781Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
INFO 2019-06-19 15:21:13,787Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-06-19 15:21:13,792Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-06-19 15:21:13,792Z lrauvNc4ToNetcdf.py processResampleNc4File():949 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
INFO 2019-06-19 15:21:14,145Z lrauvNc4ToNetcdf.py createNav():458 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 15:21:14,506Z lrauvNc4ToNetcdf.py createNav():458 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 15:21:14,861Z lrauvNc4ToNetcdf.py createNav():458 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 15:21:14,863Z lrauvNc4ToNetcdf.py nudge_coords():575 /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656.nc4
INFO 2019-06-19 15:21:15,379Z lrauvNc4ToNetcdf.py nudge_coords():593 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-19 15:21:15,386Z lrauvNc4ToNetcdf.py nudge_coords():609                  -            -            -         0    0.00              -              -
INFO 2019-06-19 15:21:15,408Z lrauvNc4ToNetcdf.py nudge_coords():631    0:        0.361   -0.0002132   -0.0000353       165    1.10           5.86          -5.93
INFO 2019-06-19 15:21:15,414Z lrauvNc4ToNetcdf.py nudge_coords():631    1:        0.367   -0.0014288   -0.0000773       946    6.37           2.22          -2.25
INFO 2019-06-19 15:21:15,420Z lrauvNc4ToNetcdf.py nudge_coords():631    2:        0.361   -0.0012968    0.0000830       779    5.24          -2.90           2.94
INFO 2019-06-19 15:21:15,426Z lrauvNc4ToNetcdf.py nudge_coords():631    3:        0.373   -0.0001540    0.0000147        98    0.65          -4.11           4.16
INFO 2019-06-19 15:21:15,432Z lrauvNc4ToNetcdf.py nudge_coords():631    4:        0.361   -0.0026182   -0.0016145      3705   24.98          11.84         -11.98
INFO 2019-06-19 15:21:15,438Z lrauvNc4ToNetcdf.py nudge_coords():631    5:        0.385   -0.0006382    0.0001778       390    2.62         -12.43          12.57
INFO 2019-06-19 15:21:15,444Z lrauvNc4ToNetcdf.py nudge_coords():631    6:        0.358   -0.0040747   -0.0003652      2978   20.04           3.34          -3.38
INFO 2019-06-19 15:21:15,450Z lrauvNc4ToNetcdf.py nudge_coords():631    7:        0.339   -0.0001733    0.0001403       212    1.47         -17.50          17.71
INFO 2019-06-19 15:21:15,456Z lrauvNc4ToNetcdf.py nudge_coords():631    8:        0.368   -0.0020878   -0.0012319      3724   25.13           8.98          -9.08
INFO 2019-06-19 15:21:15,462Z lrauvNc4ToNetcdf.py nudge_coords():631    9:        0.391   -0.0006012    0.0002240       389    2.62         -15.69          15.87
INFO 2019-06-19 15:21:15,469Z lrauvNc4ToNetcdf.py nudge_coords():631   10:        0.369   -0.0024609   -0.0012003      3786   25.51           8.62          -8.72
INFO 2019-06-19 15:21:15,475Z lrauvNc4ToNetcdf.py nudge_coords():661   12:            -            -            -       505    3.40              -              -
INFO 2019-06-19 15:21:15,475Z lrauvNc4ToNetcdf.py nudge_coords():665 Points in final series = 17677
INFO 2019-06-19 15:21:15,488Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():499 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190611T135439/20190611T175616/data.csv
INFO 2019-06-19 15:21:15,516Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():522 Found 0 position values from the Tracking database
INFO 2019-06-19 15:21:15,521Z lrauvNc4ToNetcdf.py processResampleNc4File():949 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-19 15:21:16,010Z lrauvNc4ToNetcdf.py processResampleNc4File():949 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T145428/201906111454_201906111656_2S_scieng.nc