INFO 2019-10-15 05:59:07,411Z lrauvNc4ToNetcdf.py processResampleNc4File():962 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829.nc4 file...
INFO 2019-10-15 05:59:07,411Z lrauvNc4ToNetcdf.py processResampleNc4File():963 After copying to /tmp/201906111656_201906111829.nc4
INFO 2019-10-15 05:59:08,789Z lrauvNc4ToNetcdf.py processResampleNc4File():965 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829.nc4
INFO 2019-10-15 05:59:08,805Z lrauvNc4ToNetcdf.py createSeries():211 latitude: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:08,813Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:08,820Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.55728] for variable latitude
INFO 2019-10-15 05:59:09,005Z lrauvNc4ToNetcdf.py createSeries():211 longitude: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:09,012Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:09,019Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.55728] for variable longitude
INFO 2019-10-15 05:59:09,203Z lrauvNc4ToNetcdf.py createSeries():211 depth: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:09,210Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:09,216Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.533728] for variable depth
INFO 2019-10-15 05:59:09,400Z lrauvNc4ToNetcdf.py createSeries():211 time: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:09,407Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:09,414Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.566939] for variable time
INFO 2019-10-15 05:59:09,596Z lrauvNc4ToNetcdf.py createSeries():211 latitude: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:09,603Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:09,610Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.55728] for variable latitude
INFO 2019-10-15 05:59:09,794Z lrauvNc4ToNetcdf.py createSeries():211 longitude: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:09,801Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:09,808Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.55728] for variable longitude
INFO 2019-10-15 05:59:10,006Z lrauvNc4ToNetcdf.py createSeries():211 depth: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:10,014Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:10,020Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.533728] for variable depth
INFO 2019-10-15 05:59:10,206Z lrauvNc4ToNetcdf.py createSeries():211 time: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:10,219Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:10,226Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.566939] for variable time
INFO 2019-10-15 05:59:10,417Z lrauvNc4ToNetcdf.py createSeries():211 latitude: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:10,425Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:10,435Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.55728] for variable latitude
INFO 2019-10-15 05:59:10,621Z lrauvNc4ToNetcdf.py createSeries():211 longitude: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:10,632Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:10,642Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.55728] for variable longitude
INFO 2019-10-15 05:59:10,831Z lrauvNc4ToNetcdf.py createSeries():211 depth: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:10,838Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:10,845Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.533728] for variable depth
INFO 2019-10-15 05:59:11,033Z lrauvNc4ToNetcdf.py createSeries():211 time: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:11,040Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:11,047Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.566939] for variable time
INFO 2019-10-15 05:59:11,231Z lrauvNc4ToNetcdf.py createSeries():211 latitude: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:11,238Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:11,245Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.55728] for variable latitude
INFO 2019-10-15 05:59:11,431Z lrauvNc4ToNetcdf.py createSeries():211 longitude: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:11,441Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:11,456Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.55728] for variable longitude
INFO 2019-10-15 05:59:11,651Z lrauvNc4ToNetcdf.py createSeries():211 depth: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:11,658Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:11,665Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.533728] for variable depth
INFO 2019-10-15 05:59:11,852Z lrauvNc4ToNetcdf.py createSeries():211 time: v_t values found before 2000-01-01 = [13850]
INFO 2019-10-15 05:59:11,860Z lrauvNc4ToNetcdf.py createSeries():212 Their times:  ['Sun Jan  4 00:28:08 1970']
INFO 2019-10-15 05:59:11,867Z lrauvNc4ToNetcdf.py createSeries():213 Removing them: [260888.566939] for variable time
INFO 2019-10-15 05:59:12,048Z lrauvNc4ToNetcdf.py processResampleNc4File():970 Creating t variable of the time indexes
WARNING 2019-10-15 05:59:12,055Z lrauvNc4ToNetcdf.py processResampleNc4File():1047 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829.nc4
WARNING 2019-10-15 05:59:12,055Z lrauvNc4ToNetcdf.py processResampleNc4File():1047 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829.nc4
WARNING 2019-10-15 05:59:12,056Z lrauvNc4ToNetcdf.py processResampleNc4File():1047 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829.nc4
WARNING 2019-10-15 05:59:12,056Z lrauvNc4ToNetcdf.py processResampleNc4File():1047 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829.nc4
WARNING 2019-10-15 05:59:12,056Z lrauvNc4ToNetcdf.py processResampleNc4File():1047 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829.nc4
WARNING 2019-10-15 05:59:12,056Z lrauvNc4ToNetcdf.py processResampleNc4File():1047 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829.nc4
WARNING 2019-10-15 05:59:12,056Z lrauvNc4ToNetcdf.py processResampleNc4File():1047 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829.nc4
WARNING 2019-10-15 05:59:12,056Z lrauvNc4ToNetcdf.py processResampleNc4File():1047 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829.nc4
WARNING 2019-10-15 05:59:12,057Z lrauvNc4ToNetcdf.py processResampleNc4File():1047 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829.nc4
WARNING 2019-10-15 05:59:12,057Z lrauvNc4ToNetcdf.py processResampleNc4File():1047 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829.nc4
INFO 2019-10-15 05:59:12,059Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Variable concentration_of_chromophoric_dissolved_organic_matter_in_sea_water empty so skipping
INFO 2019-10-15 05:59:12,061Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2019-10-15 05:59:12,063Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-10-15 05:59:12,065Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Variable VolumeScatCoeff117deg700nm empty so skipping
INFO 2019-10-15 05:59:12,067Z lrauvNc4ToNetcdf.py processResampleNc4File():1008 Variable mass_concentration_of_petroleum_hydrocarbons_in_sea_water empty so skipping
INFO 2019-10-15 05:59:12,068Z lrauvNc4ToNetcdf.py nudge_coords():595 /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829.nc4
DEBUG 2019-10-15 05:59:12,271Z lrauvNc4ToNetcdf.py var_series():583 longitude: rad_to_deg = True
DEBUG 2019-10-15 05:59:12,472Z lrauvNc4ToNetcdf.py var_series():583 latitude: rad_to_deg = True
DEBUG 2019-10-15 05:59:12,506Z lrauvNc4ToNetcdf.py var_series():583 longitude_fix: rad_to_deg = False
DEBUG 2019-10-15 05:59:12,539Z lrauvNc4ToNetcdf.py var_series():583 latitude_fix: rad_to_deg = False
INFO 2019-10-15 05:59:12,539Z lrauvNc4ToNetcdf.py nudge_coords():613 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-10-15 05:59:12,541Z lrauvNc4ToNetcdf.py nudge_coords():629                  -            -            -       263 -26000188.14              -              -
INFO 2019-10-15 05:59:12,545Z lrauvNc4ToNetcdf.py nudge_coords():651    0:        0.373   -0.0005962    0.0004718       415    2.79         -30.98          31.33
INFO 2019-10-15 05:59:12,551Z lrauvNc4ToNetcdf.py nudge_coords():651    1:        0.348   -0.0015536   -0.0007406      4299   28.97           4.68          -4.74
INFO 2019-10-15 05:59:12,558Z lrauvNc4ToNetcdf.py nudge_coords():651    2:        0.398   -0.0007265    0.0004847       477    3.21         -27.70          28.02
INFO 2019-10-15 05:59:12,564Z lrauvNc4ToNetcdf.py nudge_coords():651    3:        0.363   -0.0023552   -0.0001879      5693   38.35           0.90          -0.91
INFO 2019-10-15 05:59:12,571Z lrauvNc4ToNetcdf.py nudge_coords():651    4:        0.390   -0.0011955    0.0010085       848    5.72         -32.32          32.68
INFO 2019-10-15 05:59:12,577Z lrauvNc4ToNetcdf.py nudge_coords():651    5:        0.365   -0.0011022    0.0010202       806    5.42         -34.48          34.87
INFO 2019-10-15 05:59:12,584Z lrauvNc4ToNetcdf.py nudge_coords():651    6:        0.354   -0.0003628    0.0003232       258    1.74         -34.13          34.51
INFO 2019-10-15 05:59:12,590Z lrauvNc4ToNetcdf.py nudge_coords():651    7:        0.358   -0.0000623    0.0000592        48    0.32         -33.96          34.34
INFO 2019-10-15 05:59:12,596Z lrauvNc4ToNetcdf.py nudge_coords():681    9:            -            -            -       789    5.32              -              -
INFO 2019-10-15 05:59:12,596Z lrauvNc4ToNetcdf.py nudge_coords():685 Points in final series = 13896
DEBUG 2019-10-15 05:59:12,596Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():511 Constructing trackingdb url to 3600 seconds beyond time range of file
INFO 2019-10-15 05:59:12,612Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():519 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190611T155616/20190611T192955/data.csv
INFO 2019-10-15 05:59:12,641Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():542 Found 0 position values from the Tracking database
INFO 2019-10-15 05:59:12,645Z lrauvNc4ToNetcdf.py processResampleNc4File():1098 ['latitude', 'longitude', 'depth', 'time']
DEBUG 2019-10-15 05:59:12,646Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829_10S_sci.nc
DEBUG 2019-10-15 05:59:12,655Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time
DEBUG 2019-10-15 05:59:12,664Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude
DEBUG 2019-10-15 05:59:12,667Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude
DEBUG 2019-10-15 05:59:12,670Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth
DEBUG 2019-10-15 05:59:12,673Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata
INFO 2019-10-15 05:59:12,788Z lrauvNc4ToNetcdf.py processResampleNc4File():1101 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T165616/201906111656_201906111829_10S_sci.nc