INFO 2019-06-19 17:09:25,162Z lrauvNc4ToNetcdf.py processResampleNc4File():937 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4 file...
INFO 2019-06-19 17:09:25,163Z lrauvNc4ToNetcdf.py processResampleNc4File():938 After copying to /tmp/201906111831_201906111842.nc4
INFO 2019-06-19 17:09:25,937Z lrauvNc4ToNetcdf.py processResampleNc4File():940 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
INFO 2019-06-19 17:09:26,615Z lrauvNc4ToNetcdf.py processResampleNc4File():945 Creating t variable of the time indexes
WARNING 2019-06-19 17:14:55,909Z lrauvNc4ToNetcdf.py processResampleNc4File():956 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
INFO 2019-06-19 17:14:55,914Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-06-19 17:14:55,916Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Variable sea_water_salinity empty so skipping
INFO 2019-06-19 17:14:55,917Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Variable sea_water_temperature empty so skipping
WARNING 2019-06-19 17:14:55,918Z lrauvNc4ToNetcdf.py processResampleNc4File():956 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
WARNING 2019-06-19 17:14:55,918Z lrauvNc4ToNetcdf.py processResampleNc4File():956 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
INFO 2019-06-19 17:14:55,924Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-19 17:14:55,924Z lrauvNc4ToNetcdf.py processResampleNc4File():956 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
INFO 2019-06-19 17:14:55,930Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-19 17:14:55,935Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-19 17:14:55,939Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-19 17:14:55,943Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-19 17:14:55,943Z lrauvNc4ToNetcdf.py processResampleNc4File():956 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
INFO 2019-06-19 17:14:55,948Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-19 17:14:55,953Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-19 17:14:55,953Z lrauvNc4ToNetcdf.py processResampleNc4File():956 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
WARNING 2019-06-19 17:14:55,953Z lrauvNc4ToNetcdf.py processResampleNc4File():956 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
WARNING 2019-06-19 17:14:55,953Z lrauvNc4ToNetcdf.py processResampleNc4File():956 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
INFO 2019-06-19 17:14:55,957Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-19 17:14:55,963Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-19 17:14:55,964Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-19 17:14:55,968Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-19 17:14:55,973Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-19 17:14:55,975Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2019-06-19 17:14:56,005Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-19 17:14:56,036Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-19 17:14:56,066Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-19 17:14:56,066Z lrauvNc4ToNetcdf.py processResampleNc4File():956 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
WARNING 2019-06-19 17:14:56,066Z lrauvNc4ToNetcdf.py processResampleNc4File():956 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
WARNING 2019-06-19 17:14:56,067Z lrauvNc4ToNetcdf.py processResampleNc4File():956 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
WARNING 2019-06-19 17:14:56,067Z lrauvNc4ToNetcdf.py processResampleNc4File():956 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
INFO 2019-06-19 17:14:56,074Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-06-19 17:14:56,081Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-06-19 17:14:56,081Z lrauvNc4ToNetcdf.py processResampleNc4File():956 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
INFO 2019-06-19 17:14:56,132Z lrauvNc4ToNetcdf.py createNav():465 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 17:14:56,180Z lrauvNc4ToNetcdf.py createNav():465 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 17:14:56,227Z lrauvNc4ToNetcdf.py createNav():465 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 17:14:56,228Z lrauvNc4ToNetcdf.py nudge_coords():582 /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842.nc4
INFO 2019-06-19 17:14:56,363Z lrauvNc4ToNetcdf.py nudge_coords():600 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-19 17:14:56,364Z lrauvNc4ToNetcdf.py nudge_coords():616                  -            -            -         0    0.00              -              -
INFO 2019-06-19 17:14:56,366Z lrauvNc4ToNetcdf.py nudge_coords():638    0:        0.361   -0.0008207    0.0007928       657    4.48         -32.41          32.76
INFO 2019-06-19 17:14:56,372Z lrauvNc4ToNetcdf.py nudge_coords():668    2:            -            -            -       651    4.38              -              -
INFO 2019-06-19 17:14:56,372Z lrauvNc4ToNetcdf.py nudge_coords():672 Points in final series = 1308
INFO 2019-06-19 17:14:56,383Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():506 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190611T173156/20190611T194232/data.csv
INFO 2019-06-19 17:14:56,404Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():529 Found 0 position values from the Tracking database
INFO 2019-06-19 17:14:56,408Z lrauvNc4ToNetcdf.py processResampleNc4File():956 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-19 17:14:56,881Z lrauvNc4ToNetcdf.py processResampleNc4File():956 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T183144/201906111831_201906111842_2S_scieng.nc