INFO 2019-06-19 18:07:12,699Z lrauvNc4ToNetcdf.py processResampleNc4File():937 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4 file...
INFO 2019-06-19 18:07:12,700Z lrauvNc4ToNetcdf.py processResampleNc4File():938 After copying to /tmp/201906112141_201906112353.nc4
INFO 2019-06-19 18:07:13,788Z lrauvNc4ToNetcdf.py processResampleNc4File():940 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
INFO 2019-06-19 18:07:19,845Z lrauvNc4ToNetcdf.py processResampleNc4File():945 Creating t variable of the time indexes
WARNING 2019-06-19 18:07:19,855Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
INFO 2019-06-19 18:07:19,877Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
WARNING 2019-06-19 18:07:19,877Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
WARNING 2019-06-19 18:07:19,878Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
WARNING 2019-06-19 18:07:19,878Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
WARNING 2019-06-19 18:07:19,878Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
INFO 2019-06-19 18:07:19,900Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-19 18:07:19,901Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
INFO 2019-06-19 18:07:19,908Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-19 18:07:19,913Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-19 18:07:19,917Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-19 18:07:19,922Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-19 18:07:19,922Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
INFO 2019-06-19 18:07:19,960Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-19 18:07:20,247Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-19 18:07:20,247Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
WARNING 2019-06-19 18:07:20,247Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
WARNING 2019-06-19 18:07:20,247Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
INFO 2019-06-19 18:07:20,378Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-19 18:07:20,507Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-19 18:07:20,509Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-19 18:07:20,639Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-19 18:07:20,768Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-19 18:07:20,773Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-19 18:07:21,157Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-19 18:07:21,532Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-19 18:07:21,909Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-19 18:07:21,909Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
WARNING 2019-06-19 18:07:21,910Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
WARNING 2019-06-19 18:07:21,910Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
WARNING 2019-06-19 18:07:21,910Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
INFO 2019-06-19 18:07:21,918Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-06-19 18:07:21,925Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-06-19 18:07:21,925Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
INFO 2019-06-19 18:07:22,315Z lrauvNc4ToNetcdf.py createNav():465 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 18:07:22,700Z lrauvNc4ToNetcdf.py createNav():465 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 18:07:23,090Z lrauvNc4ToNetcdf.py createNav():465 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 18:07:23,091Z lrauvNc4ToNetcdf.py nudge_coords():582 /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353.nc4
INFO 2019-06-19 18:07:23,667Z lrauvNc4ToNetcdf.py nudge_coords():600 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-19 18:07:23,669Z lrauvNc4ToNetcdf.py nudge_coords():616                  -            -            -       446    3.00              -              -
INFO 2019-06-19 18:07:23,672Z lrauvNc4ToNetcdf.py nudge_coords():638    0:        0.337    0.0000217    0.0003321       236    1.60         -37.96          38.39
INFO 2019-06-19 18:07:23,678Z lrauvNc4ToNetcdf.py nudge_coords():638    1:        0.334   -0.0000085    0.0001775       136    0.91         -35.74          36.14
INFO 2019-06-19 18:07:23,685Z lrauvNc4ToNetcdf.py nudge_coords():638    2:        0.326   -0.0017810   -0.0013599      4947   35.74           6.97          -7.05
INFO 2019-06-19 18:07:23,691Z lrauvNc4ToNetcdf.py nudge_coords():638    3:        0.400    0.0000100    0.0009405       868    5.84         -29.51          29.85
INFO 2019-06-19 18:07:23,697Z lrauvNc4ToNetcdf.py nudge_coords():638    4:        0.369    0.0007681   -0.0005420      5487   37.03           2.68          -2.71
INFO 2019-06-19 18:07:23,704Z lrauvNc4ToNetcdf.py nudge_coords():638    5:        0.372   -0.0001596    0.0004037       531    3.57         -20.70          20.96
INFO 2019-06-19 18:07:23,710Z lrauvNc4ToNetcdf.py nudge_coords():638    6:        0.338   -0.0001952    0.0004490       558    3.75         -21.91          22.19
INFO 2019-06-19 18:07:23,717Z lrauvNc4ToNetcdf.py nudge_coords():638    7:        0.331    0.0002046   -0.0025294      5008   33.81          13.71         -13.86
INFO 2019-06-19 18:07:23,723Z lrauvNc4ToNetcdf.py nudge_coords():668    9:            -            -            -       950    6.39              -              -
INFO 2019-06-19 18:07:23,723Z lrauvNc4ToNetcdf.py nudge_coords():672 Points in final series = 18721
INFO 2019-06-19 18:07:23,738Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():506 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190611T204137/20190612T005319/data.csv
INFO 2019-06-19 18:07:23,775Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():529 Found 0 position values from the Tracking database
INFO 2019-06-19 18:07:23,780Z lrauvNc4ToNetcdf.py processResampleNc4File():1073 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-19 18:07:24,273Z lrauvNc4ToNetcdf.py processResampleNc4File():1076 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T214137/201906112141_201906112353_2S_scieng.nc