INFO 2019-06-19 18:07:24,650Z lrauvNc4ToNetcdf.py processResampleNc4File():937 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4 file...
INFO 2019-06-19 18:07:24,651Z lrauvNc4ToNetcdf.py processResampleNc4File():938 After copying to /tmp/201906112353_201906120244.nc4
INFO 2019-06-19 18:07:28,256Z lrauvNc4ToNetcdf.py processResampleNc4File():940 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
INFO 2019-06-19 18:07:36,206Z lrauvNc4ToNetcdf.py processResampleNc4File():945 Creating t variable of the time indexes
WARNING 2019-06-19 18:07:36,216Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
INFO 2019-06-19 18:07:36,244Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
WARNING 2019-06-19 18:07:36,244Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
WARNING 2019-06-19 18:07:36,244Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
WARNING 2019-06-19 18:07:36,245Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
WARNING 2019-06-19 18:07:36,245Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
INFO 2019-06-19 18:07:36,278Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-19 18:07:36,278Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
INFO 2019-06-19 18:07:36,286Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-19 18:07:36,291Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-19 18:07:36,296Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-19 18:07:36,301Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-19 18:07:36,301Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
INFO 2019-06-19 18:07:36,358Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-19 18:07:36,755Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-19 18:07:36,755Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
WARNING 2019-06-19 18:07:36,755Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
WARNING 2019-06-19 18:07:36,756Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
INFO 2019-06-19 18:07:36,939Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-19 18:07:37,122Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-19 18:07:37,124Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-19 18:07:37,307Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-19 18:07:37,489Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-19 18:07:37,494Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-19 18:07:37,995Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-19 18:07:38,493Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-19 18:07:38,989Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-19 18:07:38,989Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
WARNING 2019-06-19 18:07:38,989Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
WARNING 2019-06-19 18:07:38,989Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
WARNING 2019-06-19 18:07:38,989Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
INFO 2019-06-19 18:07:38,998Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-06-19 18:07:39,005Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-06-19 18:07:39,005Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
INFO 2019-06-19 18:07:39,512Z lrauvNc4ToNetcdf.py createNav():465 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 18:07:40,016Z lrauvNc4ToNetcdf.py createNav():465 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 18:07:40,535Z lrauvNc4ToNetcdf.py createNav():465 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 18:07:40,537Z lrauvNc4ToNetcdf.py nudge_coords():582 /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244.nc4
INFO 2019-06-19 18:07:41,285Z lrauvNc4ToNetcdf.py nudge_coords():600 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-19 18:07:41,288Z lrauvNc4ToNetcdf.py nudge_coords():616                  -            -            -       915    6.15              -              -
INFO 2019-06-19 18:07:41,293Z lrauvNc4ToNetcdf.py nudge_coords():638    0:        0.368    0.0000242    0.0000955       141    0.94         -18.57          18.78
INFO 2019-06-19 18:07:41,300Z lrauvNc4ToNetcdf.py nudge_coords():638    1:        0.353    0.0012737   -0.0022869      4852   32.67          12.82         -12.97
INFO 2019-06-19 18:07:41,306Z lrauvNc4ToNetcdf.py nudge_coords():638    2:        0.369   -0.0000218    0.0000280        38    0.25         -20.58          20.83
INFO 2019-06-19 18:07:41,313Z lrauvNc4ToNetcdf.py nudge_coords():638    3:        0.346   -0.0002949    0.0003277       583    3.92         -15.31          15.50
INFO 2019-06-19 18:07:41,319Z lrauvNc4ToNetcdf.py nudge_coords():638    4:        0.364   -0.0000493    0.0000622       104    0.70         -16.36          16.55
INFO 2019-06-19 18:07:41,325Z lrauvNc4ToNetcdf.py nudge_coords():638    5:        0.378   -0.0022273   -0.0027121      4777   32.22          15.42         -15.60
INFO 2019-06-19 18:07:41,332Z lrauvNc4ToNetcdf.py nudge_coords():638    6:        0.367   -0.0000785    0.0003820      1023    6.88         -10.17          10.29
INFO 2019-06-19 18:07:41,338Z lrauvNc4ToNetcdf.py nudge_coords():638    7:        0.384   -0.0024571   -0.0020573      5343   36.10          10.44         -10.56
INFO 2019-06-19 18:07:41,345Z lrauvNc4ToNetcdf.py nudge_coords():638    8:        0.378   -0.0002198    0.0000877      1227    8.26          -1.95           1.97
INFO 2019-06-19 18:07:41,351Z lrauvNc4ToNetcdf.py nudge_coords():638    9:        0.387   -0.0004078   -0.0012689      5805   39.29           5.91          -5.98
INFO 2019-06-19 18:07:41,358Z lrauvNc4ToNetcdf.py nudge_coords():638   10:        0.367   -0.0003997    0.0000003       501    3.37          -0.02           0.02
INFO 2019-06-19 18:07:41,364Z lrauvNc4ToNetcdf.py nudge_coords():668   12:            -            -            -        53    0.35              -              -
INFO 2019-06-19 18:07:41,364Z lrauvNc4ToNetcdf.py nudge_coords():672 Points in final series = 25362
INFO 2019-06-19 18:07:41,380Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():506 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190611T225320/20190612T034430/data.csv
INFO 2019-06-19 18:07:41,401Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():529 Found 0 position values from the Tracking database
INFO 2019-06-19 18:07:41,406Z lrauvNc4ToNetcdf.py processResampleNc4File():1073 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-19 18:07:41,533Z lrauvNc4ToNetcdf.py processResampleNc4File():1076 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190611T235319/201906112353_201906120244_2S_scieng.nc