INFO 2019-06-19 18:08:47,027Z lrauvNc4ToNetcdf.py processResampleNc4File():937 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4 file...
INFO 2019-06-19 18:08:47,028Z lrauvNc4ToNetcdf.py processResampleNc4File():938 After copying to /tmp/201906121654_201906121658.nc4
INFO 2019-06-19 18:08:48,164Z lrauvNc4ToNetcdf.py processResampleNc4File():940 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
INFO 2019-06-19 18:08:48,601Z lrauvNc4ToNetcdf.py processResampleNc4File():945 Creating t variable of the time indexes
WARNING 2019-06-19 18:08:48,605Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
INFO 2019-06-19 18:08:48,610Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-06-19 18:08:48,612Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable sea_water_salinity empty so skipping
INFO 2019-06-19 18:08:48,613Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable sea_water_temperature empty so skipping
WARNING 2019-06-19 18:08:48,614Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
WARNING 2019-06-19 18:08:48,614Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
INFO 2019-06-19 18:08:48,619Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-06-19 18:08:48,619Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
INFO 2019-06-19 18:08:48,625Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-06-19 18:08:48,630Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-06-19 18:08:48,634Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-06-19 18:08:48,638Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-06-19 18:08:48,639Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
INFO 2019-06-19 18:08:48,644Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-06-19 18:08:48,648Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-06-19 18:08:48,649Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
WARNING 2019-06-19 18:08:48,649Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
WARNING 2019-06-19 18:08:48,649Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
INFO 2019-06-19 18:08:48,653Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-06-19 18:08:48,658Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-06-19 18:08:48,659Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-06-19 18:08:48,664Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-06-19 18:08:48,668Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-06-19 18:08:48,670Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2019-06-19 18:08:48,682Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-19 18:08:48,693Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-06-19 18:08:48,707Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-06-19 18:08:48,707Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
WARNING 2019-06-19 18:08:48,708Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
WARNING 2019-06-19 18:08:48,708Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
WARNING 2019-06-19 18:08:48,708Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
INFO 2019-06-19 18:08:48,712Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable platform_battery_charge empty so skipping
INFO 2019-06-19 18:08:48,715Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable platform_battery_voltage empty so skipping
WARNING 2019-06-19 18:08:48,715Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
INFO 2019-06-19 18:08:48,751Z lrauvNc4ToNetcdf.py createNav():465 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 18:08:48,785Z lrauvNc4ToNetcdf.py createNav():465 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 18:08:48,829Z lrauvNc4ToNetcdf.py createNav():465 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-06-19 18:08:48,830Z lrauvNc4ToNetcdf.py nudge_coords():582 /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658.nc4
INFO 2019-06-19 18:08:48,963Z lrauvNc4ToNetcdf.py nudge_coords():600 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-06-19 18:08:48,965Z lrauvNc4ToNetcdf.py nudge_coords():616                  -            -            -         0    0.00              -              -
INFO 2019-06-19 18:08:48,966Z lrauvNc4ToNetcdf.py nudge_coords():638    0:        0.358   -0.0000435    0.0000245        28    0.18         -24.65          24.98
INFO 2019-06-19 18:08:48,972Z lrauvNc4ToNetcdf.py nudge_coords():638    1:        0.267   -0.0004163    0.0002625       333    2.35         -20.44          20.71
INFO 2019-06-19 18:08:48,978Z lrauvNc4ToNetcdf.py nudge_coords():668    3:            -            -            -        29    0.22              -              -
INFO 2019-06-19 18:08:48,978Z lrauvNc4ToNetcdf.py nudge_coords():672 Points in final series = 390
INFO 2019-06-19 18:08:48,995Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():506 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190612T155440/20190612T175839/data.csv
INFO 2019-06-19 18:08:49,031Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():529 Found 0 position values from the Tracking database
INFO 2019-06-19 18:08:49,035Z lrauvNc4ToNetcdf.py processResampleNc4File():1073 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-06-19 18:08:49,171Z lrauvNc4ToNetcdf.py processResampleNc4File():1076 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165427/201906121654_201906121658_2S_scieng.nc