INFO 2019-06-19 18:08:50,403Z lrauvNc4ToNetcdf.py processResampleNc4File():937 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 file... INFO 2019-06-19 18:08:50,403Z lrauvNc4ToNetcdf.py processResampleNc4File():938 After copying to /tmp/201906121658_201906130321.nc4 INFO 2019-06-19 18:08:51,522Z lrauvNc4ToNetcdf.py processResampleNc4File():940 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 INFO 2019-06-19 18:09:19,670Z lrauvNc4ToNetcdf.py processResampleNc4File():945 Creating t variable of the time indexes WARNING 2019-06-19 18:09:19,687Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 INFO 2019-06-19 18:09:19,825Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position WARNING 2019-06-19 18:09:19,825Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 WARNING 2019-06-19 18:09:19,825Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 WARNING 2019-06-19 18:09:19,825Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 WARNING 2019-06-19 18:09:19,826Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 INFO 2019-06-19 18:09:20,003Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle WARNING 2019-06-19 18:09:20,003Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 INFO 2019-06-19 18:09:20,107Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2019-06-19 18:09:20,114Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2019-06-19 18:09:20,120Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2019-06-19 18:09:20,126Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude WARNING 2019-06-19 18:09:20,127Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 INFO 2019-06-19 18:09:20,308Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2019-06-19 18:09:21,459Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate WARNING 2019-06-19 18:09:21,460Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 WARNING 2019-06-19 18:09:21,460Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 WARNING 2019-06-19 18:09:21,460Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 INFO 2019-06-19 18:09:21,994Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-06-19 18:09:22,525Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-06-19 18:09:22,527Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable BackscatteringCoeff700nm empty so skipping INFO 2019-06-19 18:09:23,063Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-06-19 18:09:23,602Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-06-19 18:09:23,608Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2019-06-19 18:09:25,393Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2019-06-19 18:09:27,170Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2019-06-19 18:09:28,942Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources WARNING 2019-06-19 18:09:28,942Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 WARNING 2019-06-19 18:09:28,943Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 WARNING 2019-06-19 18:09:28,943Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 WARNING 2019-06-19 18:09:28,943Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 INFO 2019-06-19 18:09:28,953Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2019-06-19 18:09:28,961Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage WARNING 2019-06-19 18:09:28,961Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 INFO 2019-06-19 18:09:30,718Z lrauvNc4ToNetcdf.py createNav():465 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-19 18:09:32,459Z lrauvNc4ToNetcdf.py createNav():465 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-19 18:09:34,205Z lrauvNc4ToNetcdf.py createNav():465 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-06-19 18:09:34,208Z lrauvNc4ToNetcdf.py nudge_coords():582 /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321.nc4 INFO 2019-06-19 18:09:36,533Z lrauvNc4ToNetcdf.py nudge_coords():600 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-06-19 18:09:36,534Z lrauvNc4ToNetcdf.py nudge_coords():616 - - - 0 0.00 - - INFO 2019-06-19 18:09:36,542Z lrauvNc4ToNetcdf.py nudge_coords():638 0: 0.346 -0.0002425 0.0001313 188 1.26 -19.01 19.26 INFO 2019-06-19 18:09:36,549Z lrauvNc4ToNetcdf.py nudge_coords():638 1: 0.360 -0.0014969 0.0010441 1148 7.73 -24.71 25.03 INFO 2019-06-19 18:09:36,555Z lrauvNc4ToNetcdf.py nudge_coords():638 2: 0.354 -0.0007062 0.0004882 560 3.76 -23.72 24.03 INFO 2019-06-19 18:09:36,562Z lrauvNc4ToNetcdf.py nudge_coords():638 3: 0.368 -0.0059793 -0.0015456 5019 33.88 8.34 -8.45 INFO 2019-06-19 18:09:36,568Z lrauvNc4ToNetcdf.py nudge_coords():638 4: 0.314 -0.0009928 0.0008092 907 6.10 -24.25 24.57 INFO 2019-06-19 18:09:36,575Z lrauvNc4ToNetcdf.py nudge_coords():638 5: 0.354 -0.0050432 -0.0017554 4732 31.99 10.03 -10.17 INFO 2019-06-19 18:09:36,582Z lrauvNc4ToNetcdf.py nudge_coords():638 6: 0.357 -0.0011237 0.0008538 1074 7.23 -21.61 21.90 INFO 2019-06-19 18:09:36,588Z lrauvNc4ToNetcdf.py nudge_coords():638 7: 0.373 -0.0057863 -0.0025828 5702 38.52 12.26 -12.42 INFO 2019-06-19 18:09:36,595Z lrauvNc4ToNetcdf.py nudge_coords():638 8: 0.358 -0.0009468 0.0005282 988 6.65 -14.53 14.72 INFO 2019-06-19 18:09:36,601Z lrauvNc4ToNetcdf.py nudge_coords():638 9: 0.358 -0.0047109 -0.0026864 5358 36.18 13.57 -13.76 INFO 2019-06-19 18:09:36,608Z lrauvNc4ToNetcdf.py nudge_coords():638 10: 0.368 -0.0002397 0.0003790 723 4.86 -14.25 14.45 INFO 2019-06-19 18:09:36,615Z lrauvNc4ToNetcdf.py nudge_coords():638 11: 0.373 -0.0023406 -0.0028886 4911 33.16 15.92 -16.14 INFO 2019-06-19 18:09:36,621Z lrauvNc4ToNetcdf.py nudge_coords():638 12: 0.360 -0.0002137 0.0002142 703 4.73 -8.28 8.40 INFO 2019-06-19 18:09:36,628Z lrauvNc4ToNetcdf.py nudge_coords():638 13: 0.359 0.0006484 -0.0021862 5573 37.62 10.62 -10.77 INFO 2019-06-19 18:09:36,635Z lrauvNc4ToNetcdf.py nudge_coords():638 14: 0.377 -0.0002628 0.0001680 1257 8.46 -3.63 3.68 INFO 2019-06-19 18:09:36,641Z lrauvNc4ToNetcdf.py nudge_coords():638 15: 0.347 -0.0000325 0.0000291 170 1.14 -4.66 4.72 INFO 2019-06-19 18:09:36,647Z lrauvNc4ToNetcdf.py nudge_coords():638 16: 0.356 -0.0000305 0.0000070 123 0.83 -1.54 1.57 INFO 2019-06-19 18:09:36,653Z lrauvNc4ToNetcdf.py nudge_coords():638 17: 0.303 0.0000002 0.0000121 86 0.58 -3.84 3.89 INFO 2019-06-19 18:09:36,660Z lrauvNc4ToNetcdf.py nudge_coords():638 18: 0.365 -0.0000200 0.0000153 98 0.66 -4.27 4.33 INFO 2019-06-19 18:09:36,666Z lrauvNc4ToNetcdf.py nudge_coords():638 19: 0.359 -0.0000222 0.0000307 89 0.60 -9.37 9.50 INFO 2019-06-19 18:09:36,672Z lrauvNc4ToNetcdf.py nudge_coords():638 20: 0.383 -0.0000632 0.0000215 390 2.63 -1.50 1.52 INFO 2019-06-19 18:09:36,678Z lrauvNc4ToNetcdf.py nudge_coords():638 21: 0.365 -0.0018191 -0.0018936 5639 37.97 9.12 -9.24 INFO 2019-06-19 18:09:36,685Z lrauvNc4ToNetcdf.py nudge_coords():638 22: 0.368 0.0000035 -0.0000008 79 0.54 0.28 -0.29 INFO 2019-06-19 18:09:36,691Z lrauvNc4ToNetcdf.py nudge_coords():638 23: 0.360 -0.0015515 -0.0024347 5429 36.56 12.17 -12.34 INFO 2019-06-19 18:09:36,698Z lrauvNc4ToNetcdf.py nudge_coords():638 24: 0.392 0.0000455 -0.0000202 94 0.63 5.85 -5.93 INFO 2019-06-19 18:09:36,704Z lrauvNc4ToNetcdf.py nudge_coords():638 25: 0.373 -0.0007080 -0.0028194 5856 39.43 13.07 -13.25 INFO 2019-06-19 18:09:36,711Z lrauvNc4ToNetcdf.py nudge_coords():638 26: 0.363 0.0004883 0.0001357 658 4.43 -5.59 5.67 INFO 2019-06-19 18:09:36,718Z lrauvNc4ToNetcdf.py nudge_coords():638 27: 0.366 0.0001950 0.0000337 284 1.91 -3.22 3.27 INFO 2019-06-19 18:09:36,725Z lrauvNc4ToNetcdf.py nudge_coords():638 28: 0.348 0.0008112 -0.0023642 2319 15.61 27.69 -28.06 INFO 2019-06-19 18:09:36,732Z lrauvNc4ToNetcdf.py nudge_coords():638 29: 0.369 0.0003725 0.0001068 579 3.90 -5.02 5.08 INFO 2019-06-19 18:09:36,739Z lrauvNc4ToNetcdf.py nudge_coords():638 30: 0.377 0.0021310 -0.0012807 2424 16.32 14.37 -14.54 INFO 2019-06-19 18:09:36,746Z lrauvNc4ToNetcdf.py nudge_coords():638 31: 0.365 0.0001250 -0.0000257 489 3.29 1.43 -1.45 INFO 2019-06-19 18:09:36,753Z lrauvNc4ToNetcdf.py nudge_coords():638 32: 0.364 0.0000059 -0.0000148 71 0.47 5.74 -5.81 INFO 2019-06-19 18:09:36,759Z lrauvNc4ToNetcdf.py nudge_coords():638 33: 0.359 0.0000720 0.0000820 682 4.59 -3.27 3.31 INFO 2019-06-19 18:09:36,766Z lrauvNc4ToNetcdf.py nudge_coords():638 34: 0.364 0.0000252 0.0000284 197 1.32 -3.93 3.98 INFO 2019-06-19 18:09:36,772Z lrauvNc4ToNetcdf.py nudge_coords():638 35: 0.339 0.0013132 -0.0002696 1751 11.80 4.19 -4.24 INFO 2019-06-19 18:09:36,779Z lrauvNc4ToNetcdf.py nudge_coords():638 36: 0.353 0.0000171 -0.0000392 317 2.13 3.37 -3.41 INFO 2019-06-19 18:09:36,785Z lrauvNc4ToNetcdf.py nudge_coords():638 37: 0.352 0.0004708 -0.0000569 1193 8.03 1.30 -1.31 INFO 2019-06-19 18:09:36,792Z lrauvNc4ToNetcdf.py nudge_coords():638 38: 0.391 0.0001759 0.0000305 1218 8.20 -0.68 0.69 INFO 2019-06-19 18:09:36,799Z lrauvNc4ToNetcdf.py nudge_coords():638 39: 0.384 0.0000017 0.0000221 197 1.33 -3.05 3.09 INFO 2019-06-19 18:09:36,805Z lrauvNc4ToNetcdf.py nudge_coords():638 40: 0.368 0.0006553 -0.0004697 1499 10.10 8.52 -8.62 INFO 2019-06-19 18:09:36,812Z lrauvNc4ToNetcdf.py nudge_coords():638 41: 0.389 0.0000053 -0.0000006 43 0.28 0.38 -0.38 INFO 2019-06-19 18:09:36,818Z lrauvNc4ToNetcdf.py nudge_coords():638 42: 0.375 0.0000098 0.0000142 119 0.82 -3.18 3.22 INFO 2019-06-19 18:09:36,824Z lrauvNc4ToNetcdf.py nudge_coords():638 43: 0.373 -0.0000002 0.0000297 220 1.48 -3.68 3.72 INFO 2019-06-19 18:09:36,830Z lrauvNc4ToNetcdf.py nudge_coords():638 44: 0.328 0.0000237 -0.0000234 87 0.58 7.37 -7.46 INFO 2019-06-19 18:09:36,837Z lrauvNc4ToNetcdf.py nudge_coords():638 45: 0.354 0.0000706 0.0001653 981 6.60 -4.59 4.64 INFO 2019-06-19 18:09:36,843Z lrauvNc4ToNetcdf.py nudge_coords():638 46: 0.349 0.0000847 0.0001280 868 5.84 -4.02 4.06 INFO 2019-06-19 18:09:36,850Z lrauvNc4ToNetcdf.py nudge_coords():638 47: 0.373 0.0001738 0.0000807 1450 9.77 -1.51 1.53 INFO 2019-06-19 18:09:36,856Z lrauvNc4ToNetcdf.py nudge_coords():638 48: 0.373 -0.0008052 0.0002481 4574 30.83 -1.48 1.49 INFO 2019-06-19 18:09:36,863Z lrauvNc4ToNetcdf.py nudge_coords():638 49: 0.318 -0.0000020 0.0000105 877 5.91 -0.33 0.33 INFO 2019-06-19 18:09:36,870Z lrauvNc4ToNetcdf.py nudge_coords():638 50: 0.306 -0.0000148 -0.0000267 916 6.16 0.79 -0.80 INFO 2019-06-19 18:09:36,876Z lrauvNc4ToNetcdf.py nudge_coords():638 51: 0.369 0.0000135 0.0000140 888 5.98 -0.43 0.43 INFO 2019-06-19 18:09:36,883Z lrauvNc4ToNetcdf.py nudge_coords():638 52: 0.382 0.0000178 -0.0000040 892 6.01 0.12 -0.12 INFO 2019-06-19 18:09:36,889Z lrauvNc4ToNetcdf.py nudge_coords():638 53: 0.346 -0.0000098 0.0000133 701 4.72 -0.52 0.52 INFO 2019-06-19 18:09:36,895Z lrauvNc4ToNetcdf.py nudge_coords():638 54: 0.217 -0.0000167 0.0000283 374 2.52 -2.06 2.09 INFO 2019-06-19 18:09:36,902Z lrauvNc4ToNetcdf.py nudge_coords():638 55: 0.343 -0.0010564 0.0006862 582 3.92 -32.14 32.48 INFO 2019-06-19 18:09:36,908Z lrauvNc4ToNetcdf.py nudge_coords():638 56: 0.358 -0.0000051 -0.0000003 406 2.73 0.02 -0.02 INFO 2019-06-19 18:09:36,915Z lrauvNc4ToNetcdf.py nudge_coords():638 57: 0.360 0.0000046 0.0000080 372 2.50 -0.59 0.59 INFO 2019-06-19 18:09:36,921Z lrauvNc4ToNetcdf.py nudge_coords():638 58: 0.360 0.0002711 -0.0002519 2962 19.97 2.31 -2.34 INFO 2019-06-19 18:09:36,928Z lrauvNc4ToNetcdf.py nudge_coords():638 59: 0.366 0.0000745 -0.0002138 1652 11.14 3.52 -3.56 INFO 2019-06-19 18:09:36,935Z lrauvNc4ToNetcdf.py nudge_coords():638 60: 0.354 -0.0000566 -0.0000095 625 4.20 0.41 -0.42 INFO 2019-06-19 18:09:36,941Z lrauvNc4ToNetcdf.py nudge_coords():638 61: 0.361 0.0001922 -0.0001009 750 5.05 3.66 -3.70 INFO 2019-06-19 18:09:36,947Z lrauvNc4ToNetcdf.py nudge_coords():668 63: - - - 923 6.21 - - INFO 2019-06-19 18:09:36,948Z lrauvNc4ToNetcdf.py nudge_coords():672 Points in final series = 92036 INFO 2019-06-19 18:09:36,966Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():506 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190612T155852/20190613T042126/data.csv INFO 2019-06-19 18:09:37,036Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():529 Found 0 position values from the Tracking database INFO 2019-06-19 18:09:37,048Z lrauvNc4ToNetcdf.py processResampleNc4File():1073 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2019-06-19 18:09:37,337Z lrauvNc4ToNetcdf.py processResampleNc4File():1076 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190610_20190613/20190612T165841/201906121658_201906130321_2S_scieng.nc