INFO 2019-07-04 18:03:48,738Z lrauvNc4ToNetcdf.py processResampleNc4File():937 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 file... INFO 2019-07-04 18:03:48,739Z lrauvNc4ToNetcdf.py processResampleNc4File():938 After copying to /tmp/201907012038_201907012222.nc4 INFO 2019-07-04 18:03:49,821Z lrauvNc4ToNetcdf.py processResampleNc4File():940 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 INFO 2019-07-04 18:03:54,254Z lrauvNc4ToNetcdf.py processResampleNc4File():945 Creating t variable of the time indexes WARNING 2019-07-04 18:03:54,262Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 INFO 2019-07-04 18:03:54,316Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2019-07-04 18:03:54,412Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity INFO 2019-07-04 18:03:54,506Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature WARNING 2019-07-04 18:03:54,506Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 WARNING 2019-07-04 18:03:54,506Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 INFO 2019-07-04 18:03:54,527Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle WARNING 2019-07-04 18:03:54,527Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 INFO 2019-07-04 18:03:54,541Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2019-07-04 18:03:54,546Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2019-07-04 18:03:54,551Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2019-07-04 18:03:54,555Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude WARNING 2019-07-04 18:03:54,556Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 INFO 2019-07-04 18:03:54,587Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2019-07-04 18:03:54,667Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate WARNING 2019-07-04 18:03:54,667Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 WARNING 2019-07-04 18:03:54,667Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 WARNING 2019-07-04 18:03:54,667Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 INFO 2019-07-04 18:03:54,691Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-07-04 18:03:54,714Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-07-04 18:03:54,716Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable BackscatteringCoeff700nm empty so skipping INFO 2019-07-04 18:03:54,738Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-07-04 18:03:54,762Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-07-04 18:03:54,766Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2019-07-04 18:03:55,013Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2019-07-04 18:03:55,262Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2019-07-04 18:03:55,512Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources WARNING 2019-07-04 18:03:55,512Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 WARNING 2019-07-04 18:03:55,513Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 WARNING 2019-07-04 18:03:55,513Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 WARNING 2019-07-04 18:03:55,513Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 INFO 2019-07-04 18:03:55,522Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2019-07-04 18:03:55,529Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage WARNING 2019-07-04 18:03:55,529Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 INFO 2019-07-04 18:03:55,836Z lrauvNc4ToNetcdf.py createNav():465 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-07-04 18:03:56,140Z lrauvNc4ToNetcdf.py createNav():465 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-07-04 18:03:56,445Z lrauvNc4ToNetcdf.py createNav():465 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-07-04 18:03:56,446Z lrauvNc4ToNetcdf.py nudge_coords():582 /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222.nc4 INFO 2019-07-04 18:03:56,876Z lrauvNc4ToNetcdf.py nudge_coords():600 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-07-04 18:03:56,878Z lrauvNc4ToNetcdf.py nudge_coords():616 - - - 0 0.00 - - INFO 2019-07-04 18:03:56,881Z lrauvNc4ToNetcdf.py nudge_coords():638 0: 0.362 -0.0000033 -0.0000010 17 0.11 -1.08 -1.72 INFO 2019-07-04 18:03:56,887Z lrauvNc4ToNetcdf.py nudge_coords():638 1: 0.375 0.0002936 -0.0006301 433 2.92 -25.06 -40.04 INFO 2019-07-04 18:03:56,893Z lrauvNc4ToNetcdf.py nudge_coords():638 2: 0.348 0.0002990 -0.0003307 405 2.74 -14.00 -22.39 INFO 2019-07-04 18:03:56,899Z lrauvNc4ToNetcdf.py nudge_coords():638 3: 0.334 0.0001610 -0.0002198 151 1.65 -15.45 -24.72 INFO 2019-07-04 18:03:56,905Z lrauvNc4ToNetcdf.py nudge_coords():638 4: 0.355 0.0000312 -0.0000428 52 0.34 -14.42 -23.06 INFO 2019-07-04 18:03:56,911Z lrauvNc4ToNetcdf.py nudge_coords():638 5: 0.376 0.0000027 -0.0000108 8 0.08 -16.24 -25.97 INFO 2019-07-04 18:03:56,917Z lrauvNc4ToNetcdf.py nudge_coords():638 6: 0.337 0.0016768 -0.0025093 2978 20.05 -14.46 -23.20 INFO 2019-07-04 18:03:56,923Z lrauvNc4ToNetcdf.py nudge_coords():638 7: 0.358 0.0000435 -0.0000683 58 0.40 -19.54 -31.35 INFO 2019-07-04 18:03:56,929Z lrauvNc4ToNetcdf.py nudge_coords():638 8: 0.353 0.0005811 -0.0007761 4634 31.31 -2.87 -4.59 INFO 2019-07-04 18:03:56,936Z lrauvNc4ToNetcdf.py nudge_coords():638 9: 0.362 0.0006932 -0.0003712 521 3.91 -10.98 -17.59 INFO 2019-07-04 18:03:56,942Z lrauvNc4ToNetcdf.py nudge_coords():638 10: 0.365 0.0012005 -0.0008930 2264 15.25 -6.81 -10.85 INFO 2019-07-04 18:03:56,948Z lrauvNc4ToNetcdf.py nudge_coords():638 11: 0.358 0.0009394 -0.0003301 923 6.27 -6.12 -9.75 INFO 2019-07-04 18:03:56,954Z lrauvNc4ToNetcdf.py nudge_coords():668 13: - - - 338 2.63 - - INFO 2019-07-04 18:03:56,955Z lrauvNc4ToNetcdf.py nudge_coords():672 Points in final series = 12782 INFO 2019-07-04 18:03:56,973Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():506 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190701T193836/20190701T232206/data.csv INFO 2019-07-04 18:03:57,011Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():529 Found 0 position values from the Tracking database INFO 2019-07-04 18:03:57,015Z lrauvNc4ToNetcdf.py processResampleNc4File():1073 ['control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2019-07-04 18:03:57,305Z lrauvNc4ToNetcdf.py processResampleNc4File():1076 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T203826/201907012038_201907012222_2S_scieng.nc