INFO 2019-07-04 18:03:57,531Z lrauvNc4ToNetcdf.py processResampleNc4File():937 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4 file...
INFO 2019-07-04 18:03:57,531Z lrauvNc4ToNetcdf.py processResampleNc4File():938 After copying to /tmp/201907012222_201907012321.nc4
INFO 2019-07-04 18:03:58,613Z lrauvNc4ToNetcdf.py processResampleNc4File():940 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
INFO 2019-07-04 18:04:01,536Z lrauvNc4ToNetcdf.py processResampleNc4File():945 Creating t variable of the time indexes
WARNING 2019-07-04 18:04:01,542Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
INFO 2019-07-04 18:04:01,557Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-07-04 18:04:01,559Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable sea_water_salinity empty so skipping
INFO 2019-07-04 18:04:01,561Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable sea_water_temperature empty so skipping
WARNING 2019-07-04 18:04:01,562Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
WARNING 2019-07-04 18:04:01,562Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
INFO 2019-07-04 18:04:01,576Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-07-04 18:04:01,576Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
INFO 2019-07-04 18:04:01,582Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-07-04 18:04:01,587Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-07-04 18:04:01,592Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-07-04 18:04:01,596Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-07-04 18:04:01,597Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
INFO 2019-07-04 18:04:01,635Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-07-04 18:04:01,738Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-07-04 18:04:01,738Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
WARNING 2019-07-04 18:04:01,738Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
WARNING 2019-07-04 18:04:01,738Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
INFO 2019-07-04 18:04:01,740Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable concentration_of_chromophoric_dissolved_organic_matter_in_sea_water empty so skipping
INFO 2019-07-04 18:04:01,742Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2019-07-04 18:04:01,744Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-07-04 18:04:01,746Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable VolumeScatCoeff117deg700nm empty so skipping
INFO 2019-07-04 18:04:01,748Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable mass_concentration_of_petroleum_hydrocarbons_in_sea_water empty so skipping
INFO 2019-07-04 18:04:01,752Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-07-04 18:04:01,924Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-07-04 18:04:02,098Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-07-04 18:04:02,269Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-07-04 18:04:02,269Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
WARNING 2019-07-04 18:04:02,270Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
WARNING 2019-07-04 18:04:02,270Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
WARNING 2019-07-04 18:04:02,270Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
INFO 2019-07-04 18:04:02,278Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-07-04 18:04:02,285Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-07-04 18:04:02,285Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
INFO 2019-07-04 18:04:02,477Z lrauvNc4ToNetcdf.py createNav():465 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-04 18:04:02,667Z lrauvNc4ToNetcdf.py createNav():465 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-04 18:04:02,855Z lrauvNc4ToNetcdf.py createNav():465 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-04 18:04:02,856Z lrauvNc4ToNetcdf.py nudge_coords():582 /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321.nc4
INFO 2019-07-04 18:04:03,191Z lrauvNc4ToNetcdf.py nudge_coords():600 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-07-04 18:04:03,194Z lrauvNc4ToNetcdf.py nudge_coords():616                  -            -            -       610    4.10              -              -
INFO 2019-07-04 18:04:03,196Z lrauvNc4ToNetcdf.py nudge_coords():638    0:        0.391    0.0006375    0.0002040       581    3.92           6.05           9.64
INFO 2019-07-04 18:04:03,202Z lrauvNc4ToNetcdf.py nudge_coords():638    1:        0.354    0.0000603    0.0000430        40    0.35          14.20          22.63
INFO 2019-07-04 18:04:03,208Z lrauvNc4ToNetcdf.py nudge_coords():638    2:        0.366    0.0025072   -0.0009161      5182   34.90          -3.07          -4.86
INFO 2019-07-04 18:04:03,215Z lrauvNc4ToNetcdf.py nudge_coords():638    3:        0.362    0.0001676    0.0000607       516    3.71           1.91           3.03
INFO 2019-07-04 18:04:03,220Z lrauvNc4ToNetcdf.py nudge_coords():638    4:        0.365    0.0000109    0.0000084        53    0.35           2.82           4.46
INFO 2019-07-04 18:04:03,226Z lrauvNc4ToNetcdf.py nudge_coords():638    5:        0.369    0.0001368    0.0001794       807    5.44           3.86           6.11
INFO 2019-07-04 18:04:03,232Z lrauvNc4ToNetcdf.py nudge_coords():638    6:        0.361    0.0001514    0.0000699       809    5.45           1.50           2.38
INFO 2019-07-04 18:04:03,238Z lrauvNc4ToNetcdf.py nudge_coords():668    8:            -            -            -       103    0.70              -              -
INFO 2019-07-04 18:04:03,238Z lrauvNc4ToNetcdf.py nudge_coords():672 Points in final series = 8701
INFO 2019-07-04 18:04:03,255Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():506 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190701T212206/20190702T002105/data.csv
INFO 2019-07-04 18:04:03,297Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():529 Found 0 position values from the Tracking database
INFO 2019-07-04 18:04:03,301Z lrauvNc4ToNetcdf.py processResampleNc4File():1073 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-07-04 18:04:03,600Z lrauvNc4ToNetcdf.py processResampleNc4File():1076 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190701T222206/201907012222_201907012321_2S_scieng.nc