INFO 2019-07-04 18:04:42,210Z lrauvNc4ToNetcdf.py processResampleNc4File():937 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 file... INFO 2019-07-04 18:04:42,210Z lrauvNc4ToNetcdf.py processResampleNc4File():938 After copying to /tmp/201907020637_201907021508.nc4 INFO 2019-07-04 18:04:43,348Z lrauvNc4ToNetcdf.py processResampleNc4File():940 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 INFO 2019-07-04 18:05:06,223Z lrauvNc4ToNetcdf.py processResampleNc4File():945 Creating t variable of the time indexes WARNING 2019-07-04 18:05:06,242Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 INFO 2019-07-04 18:05:06,295Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2019-07-04 18:05:08,934Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity INFO 2019-07-04 18:05:11,584Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature WARNING 2019-07-04 18:05:11,584Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 WARNING 2019-07-04 18:05:11,584Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 INFO 2019-07-04 18:05:11,777Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle WARNING 2019-07-04 18:05:11,778Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 INFO 2019-07-04 18:05:11,793Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2019-07-04 18:05:11,800Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2019-07-04 18:05:11,805Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2019-07-04 18:05:11,811Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude WARNING 2019-07-04 18:05:11,811Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 INFO 2019-07-04 18:05:12,496Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2019-07-04 18:05:13,768Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate WARNING 2019-07-04 18:05:13,768Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 WARNING 2019-07-04 18:05:13,769Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 WARNING 2019-07-04 18:05:13,769Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 INFO 2019-07-04 18:05:14,296Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-07-04 18:05:14,822Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-07-04 18:05:14,824Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable BackscatteringCoeff700nm empty so skipping INFO 2019-07-04 18:05:15,354Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-07-04 18:05:15,885Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-07-04 18:05:15,890Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2019-07-04 18:05:17,369Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2019-07-04 18:05:18,829Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2019-07-04 18:05:20,303Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources WARNING 2019-07-04 18:05:20,303Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 WARNING 2019-07-04 18:05:20,303Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 WARNING 2019-07-04 18:05:20,304Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 WARNING 2019-07-04 18:05:20,304Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 INFO 2019-07-04 18:05:20,316Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2019-07-04 18:05:20,324Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage WARNING 2019-07-04 18:05:20,324Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 INFO 2019-07-04 18:05:21,723Z lrauvNc4ToNetcdf.py createNav():465 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-07-04 18:05:23,117Z lrauvNc4ToNetcdf.py createNav():465 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-07-04 18:05:24,507Z lrauvNc4ToNetcdf.py createNav():465 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-07-04 18:05:24,510Z lrauvNc4ToNetcdf.py nudge_coords():582 /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508.nc4 INFO 2019-07-04 18:05:26,360Z lrauvNc4ToNetcdf.py nudge_coords():600 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-07-04 18:05:26,363Z lrauvNc4ToNetcdf.py nudge_coords():616 - - - 452 3.04 - - INFO 2019-07-04 18:05:26,372Z lrauvNc4ToNetcdf.py nudge_coords():638 0: 0.344 0.0002633 0.0001870 881 5.94 3.69 5.83 INFO 2019-07-04 18:05:26,379Z lrauvNc4ToNetcdf.py nudge_coords():638 1: 0.384 0.0003765 0.0001741 809 5.45 3.75 5.92 INFO 2019-07-04 18:05:26,385Z lrauvNc4ToNetcdf.py nudge_coords():638 2: 0.370 0.0003457 0.0002363 828 5.58 4.97 7.85 INFO 2019-07-04 18:05:26,392Z lrauvNc4ToNetcdf.py nudge_coords():638 3: 0.355 -0.0001895 0.0003802 661 4.45 10.03 15.81 INFO 2019-07-04 18:05:26,398Z lrauvNc4ToNetcdf.py nudge_coords():638 4: 0.345 0.0001825 0.0000173 157 1.07 1.90 3.00 INFO 2019-07-04 18:05:26,404Z lrauvNc4ToNetcdf.py nudge_coords():638 5: 0.307 0.0021117 -0.0017655 7279 49.03 -4.22 -6.67 INFO 2019-07-04 18:05:26,411Z lrauvNc4ToNetcdf.py nudge_coords():638 6: 0.352 0.0000230 -0.0000144 13 0.30 -5.68 -8.98 INFO 2019-07-04 18:05:26,417Z lrauvNc4ToNetcdf.py nudge_coords():638 7: 0.343 0.0026267 -0.0020760 7142 48.11 -5.03 -8.00 INFO 2019-07-04 18:05:26,424Z lrauvNc4ToNetcdf.py nudge_coords():638 8: 0.328 -0.0000293 -0.0000745 403 2.75 -3.16 -5.03 INFO 2019-07-04 18:05:26,430Z lrauvNc4ToNetcdf.py nudge_coords():638 9: 0.362 0.0021589 -0.0021499 7025 47.32 -5.29 -8.42 INFO 2019-07-04 18:05:26,437Z lrauvNc4ToNetcdf.py nudge_coords():638 10: 0.363 -0.0001734 -0.0000161 566 3.85 -0.49 -0.78 INFO 2019-07-04 18:05:26,444Z lrauvNc4ToNetcdf.py nudge_coords():638 11: 0.358 0.0020163 -0.0023225 7104 47.85 -5.65 -8.99 INFO 2019-07-04 18:05:26,451Z lrauvNc4ToNetcdf.py nudge_coords():638 12: 0.395 -0.0000299 -0.0000390 488 3.31 -1.37 -2.18 INFO 2019-07-04 18:05:26,457Z lrauvNc4ToNetcdf.py nudge_coords():638 13: 0.352 0.0023080 -0.0021532 7076 47.66 -5.26 -8.37 INFO 2019-07-04 18:05:26,464Z lrauvNc4ToNetcdf.py nudge_coords():638 14: 0.364 0.0000059 0.0000015 509 3.69 0.05 0.08 INFO 2019-07-04 18:05:26,471Z lrauvNc4ToNetcdf.py nudge_coords():638 15: 0.351 0.0027074 -0.0021412 7547 50.84 -4.90 -7.80 INFO 2019-07-04 18:05:26,478Z lrauvNc4ToNetcdf.py nudge_coords():638 16: 0.364 -0.0000174 0.0000287 107 0.74 4.53 7.21 INFO 2019-07-04 18:05:26,484Z lrauvNc4ToNetcdf.py nudge_coords():638 17: 0.361 0.0029313 -0.0019932 7012 47.24 -4.91 -7.82 INFO 2019-07-04 18:05:26,492Z lrauvNc4ToNetcdf.py nudge_coords():638 18: 0.336 -0.0000871 0.0000487 490 3.32 1.71 2.72 INFO 2019-07-04 18:05:26,498Z lrauvNc4ToNetcdf.py nudge_coords():638 19: 0.369 0.0028624 -0.0017501 7056 47.53 -4.29 -6.82 INFO 2019-07-04 18:05:26,505Z lrauvNc4ToNetcdf.py nudge_coords():638 20: 0.340 0.0000249 -0.0000009 498 3.44 -0.03 -0.05 INFO 2019-07-04 18:05:26,512Z lrauvNc4ToNetcdf.py nudge_coords():638 21: 0.375 0.0027168 -0.0017804 7256 48.87 -4.25 -6.75 INFO 2019-07-04 18:05:26,519Z lrauvNc4ToNetcdf.py nudge_coords():638 22: 0.385 -0.0000045 0.0000188 262 1.79 1.23 1.95 INFO 2019-07-04 18:05:26,525Z lrauvNc4ToNetcdf.py nudge_coords():638 23: 0.371 0.0005918 -0.0008380 2900 19.52 -5.01 -7.95 INFO 2019-07-04 18:05:26,532Z lrauvNc4ToNetcdf.py nudge_coords():638 24: 0.369 0.0002669 0.0002945 1163 7.84 4.38 6.96 INFO 2019-07-04 18:05:26,539Z lrauvNc4ToNetcdf.py nudge_coords():668 26: - - - 39 0.27 - - INFO 2019-07-04 18:05:26,539Z lrauvNc4ToNetcdf.py nudge_coords():672 Points in final series = 75723 INFO 2019-07-04 18:05:26,560Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():506 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190702T053730/20190702T160828/data.csv INFO 2019-07-04 18:05:26,588Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():529 Found 0 position values from the Tracking database INFO 2019-07-04 18:05:26,595Z lrauvNc4ToNetcdf.py processResampleNc4File():1073 ['control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2019-07-04 18:05:27,180Z lrauvNc4ToNetcdf.py processResampleNc4File():1076 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190702T063730/201907020637_201907021508_2S_scieng.nc