INFO 2019-07-04 18:06:28,865Z lrauvNc4ToNetcdf.py processResampleNc4File():937 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 file... INFO 2019-07-04 18:06:28,865Z lrauvNc4ToNetcdf.py processResampleNc4File():938 After copying to /tmp/201907030017_201907030335.nc4 INFO 2019-07-04 18:06:30,074Z lrauvNc4ToNetcdf.py processResampleNc4File():940 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 INFO 2019-07-04 18:06:39,052Z lrauvNc4ToNetcdf.py processResampleNc4File():945 Creating t variable of the time indexes WARNING 2019-07-04 18:06:39,064Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 INFO 2019-07-04 18:06:39,100Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2019-07-04 18:06:40,121Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity INFO 2019-07-04 18:06:41,135Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature WARNING 2019-07-04 18:06:41,136Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 WARNING 2019-07-04 18:06:41,136Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 INFO 2019-07-04 18:06:41,211Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle WARNING 2019-07-04 18:06:41,211Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 INFO 2019-07-04 18:06:41,219Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2019-07-04 18:06:41,224Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2019-07-04 18:06:41,229Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2019-07-04 18:06:41,234Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude WARNING 2019-07-04 18:06:41,235Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 INFO 2019-07-04 18:06:41,497Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2019-07-04 18:06:41,867Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate WARNING 2019-07-04 18:06:41,867Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 WARNING 2019-07-04 18:06:41,867Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 WARNING 2019-07-04 18:06:41,867Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 INFO 2019-07-04 18:06:42,075Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-07-04 18:06:42,282Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-07-04 18:06:42,284Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable BackscatteringCoeff700nm empty so skipping INFO 2019-07-04 18:06:42,490Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-07-04 18:06:42,696Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-07-04 18:06:42,701Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2019-07-04 18:06:43,267Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2019-07-04 18:06:43,830Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2019-07-04 18:06:44,396Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources WARNING 2019-07-04 18:06:44,397Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 WARNING 2019-07-04 18:06:44,397Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 WARNING 2019-07-04 18:06:44,397Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 WARNING 2019-07-04 18:06:44,397Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 INFO 2019-07-04 18:06:44,408Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2019-07-04 18:06:44,415Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage WARNING 2019-07-04 18:06:44,415Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 INFO 2019-07-04 18:06:44,975Z lrauvNc4ToNetcdf.py createNav():465 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-07-04 18:06:45,525Z lrauvNc4ToNetcdf.py createNav():465 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-07-04 18:06:46,072Z lrauvNc4ToNetcdf.py createNav():465 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-07-04 18:06:46,074Z lrauvNc4ToNetcdf.py nudge_coords():582 /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335.nc4 INFO 2019-07-04 18:06:46,900Z lrauvNc4ToNetcdf.py nudge_coords():600 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-07-04 18:06:46,902Z lrauvNc4ToNetcdf.py nudge_coords():616 - - - 521 3.50 - - INFO 2019-07-04 18:06:46,908Z lrauvNc4ToNetcdf.py nudge_coords():638 0: 0.350 0.0000702 -0.0000077 209 1.42 -0.64 -1.01 INFO 2019-07-04 18:06:46,914Z lrauvNc4ToNetcdf.py nudge_coords():638 1: 0.334 -0.0000510 0.0000532 157 1.08 5.80 9.15 INFO 2019-07-04 18:06:46,920Z lrauvNc4ToNetcdf.py nudge_coords():638 2: 0.336 0.0015683 -0.0005764 2416 16.28 -4.13 -6.56 INFO 2019-07-04 18:06:46,927Z lrauvNc4ToNetcdf.py nudge_coords():638 3: 0.330 0.0000098 -0.0000018 9 0.06 -3.30 -5.24 INFO 2019-07-04 18:06:46,933Z lrauvNc4ToNetcdf.py nudge_coords():638 4: 0.319 0.0008688 -0.0005381 2842 19.14 -3.28 -5.21 INFO 2019-07-04 18:06:46,940Z lrauvNc4ToNetcdf.py nudge_coords():638 5: 0.386 0.0001127 0.0000465 125 0.85 6.39 10.14 INFO 2019-07-04 18:06:46,946Z lrauvNc4ToNetcdf.py nudge_coords():638 6: 0.347 0.0022947 -0.0006942 6272 42.44 -1.93 -3.03 INFO 2019-07-04 18:06:46,952Z lrauvNc4ToNetcdf.py nudge_coords():638 7: 0.347 0.0013748 -0.0005020 2556 17.21 -3.42 -5.40 INFO 2019-07-04 18:06:46,959Z lrauvNc4ToNetcdf.py nudge_coords():638 8: 0.359 0.0002066 -0.0000924 351 2.69 -4.03 -6.36 INFO 2019-07-04 18:06:46,965Z lrauvNc4ToNetcdf.py nudge_coords():638 9: 0.284 0.0014761 -0.0008631 2482 16.73 -6.02 -9.56 INFO 2019-07-04 18:06:46,972Z lrauvNc4ToNetcdf.py nudge_coords():638 10: 0.349 0.0004601 -0.0000287 557 3.81 -0.88 -1.39 INFO 2019-07-04 18:06:46,978Z lrauvNc4ToNetcdf.py nudge_coords():638 11: 0.358 0.0012465 0.0003181 3085 20.77 1.80 2.84 INFO 2019-07-04 18:06:46,984Z lrauvNc4ToNetcdf.py nudge_coords():638 12: 0.369 0.0002663 0.0004660 684 4.85 11.29 17.81 INFO 2019-07-04 18:06:46,990Z lrauvNc4ToNetcdf.py nudge_coords():638 13: 0.381 0.0003817 -0.0000488 2500 16.84 -0.34 -0.54 INFO 2019-07-04 18:06:46,997Z lrauvNc4ToNetcdf.py nudge_coords():638 14: 0.348 0.0001458 -0.0001035 505 3.59 -3.38 -5.35 INFO 2019-07-04 18:06:47,003Z lrauvNc4ToNetcdf.py nudge_coords():638 15: 0.334 0.0006744 -0.0007922 2372 15.98 -5.79 -9.19 INFO 2019-07-04 18:06:47,010Z lrauvNc4ToNetcdf.py nudge_coords():638 16: 0.369 -0.0000535 0.0001077 641 4.37 2.88 4.57 INFO 2019-07-04 18:06:47,016Z lrauvNc4ToNetcdf.py nudge_coords():668 18: - - - 959 6.68 - - INFO 2019-07-04 18:06:47,016Z lrauvNc4ToNetcdf.py nudge_coords():672 Points in final series = 29243 INFO 2019-07-04 18:06:47,038Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():506 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190702T231715/20190703T043540/data.csv INFO 2019-07-04 18:06:47,067Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():529 Found 0 position values from the Tracking database INFO 2019-07-04 18:06:47,072Z lrauvNc4ToNetcdf.py processResampleNc4File():1073 ['control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2019-07-04 18:06:47,357Z lrauvNc4ToNetcdf.py processResampleNc4File():1076 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T001715/201907030017_201907030335_2S_scieng.nc