INFO 2019-07-04 18:06:59,199Z lrauvNc4ToNetcdf.py processResampleNc4File():937 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4 file...
INFO 2019-07-04 18:06:59,200Z lrauvNc4ToNetcdf.py processResampleNc4File():938 After copying to /tmp/201907030447_201907030503.nc4
INFO 2019-07-04 18:07:00,169Z lrauvNc4ToNetcdf.py processResampleNc4File():940 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
INFO 2019-07-04 18:07:01,028Z lrauvNc4ToNetcdf.py processResampleNc4File():945 Creating t variable of the time indexes
WARNING 2019-07-04 18:07:01,032Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
INFO 2019-07-04 18:07:01,037Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-07-04 18:07:01,039Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable sea_water_salinity empty so skipping
INFO 2019-07-04 18:07:01,040Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable sea_water_temperature empty so skipping
WARNING 2019-07-04 18:07:01,041Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
WARNING 2019-07-04 18:07:01,041Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
INFO 2019-07-04 18:07:01,046Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-07-04 18:07:01,046Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
INFO 2019-07-04 18:07:01,052Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-07-04 18:07:01,057Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-07-04 18:07:01,061Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-07-04 18:07:01,065Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-07-04 18:07:01,066Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
INFO 2019-07-04 18:07:01,071Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-07-04 18:07:01,075Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-07-04 18:07:01,076Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
WARNING 2019-07-04 18:07:01,076Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
WARNING 2019-07-04 18:07:01,076Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
INFO 2019-07-04 18:07:01,081Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-07-04 18:07:01,085Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-07-04 18:07:01,087Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-07-04 18:07:01,091Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-07-04 18:07:01,095Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-07-04 18:07:01,097Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2019-07-04 18:07:01,132Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-07-04 18:07:01,168Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-07-04 18:07:01,203Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-07-04 18:07:01,203Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
WARNING 2019-07-04 18:07:01,204Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
WARNING 2019-07-04 18:07:01,204Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
WARNING 2019-07-04 18:07:01,204Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
INFO 2019-07-04 18:07:01,212Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-07-04 18:07:01,219Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-07-04 18:07:01,219Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
INFO 2019-07-04 18:07:01,287Z lrauvNc4ToNetcdf.py createNav():465 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-04 18:07:01,355Z lrauvNc4ToNetcdf.py createNav():465 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-04 18:07:01,422Z lrauvNc4ToNetcdf.py createNav():465 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-04 18:07:01,423Z lrauvNc4ToNetcdf.py nudge_coords():582 /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503.nc4
INFO 2019-07-04 18:07:01,577Z lrauvNc4ToNetcdf.py nudge_coords():600 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-07-04 18:07:01,579Z lrauvNc4ToNetcdf.py nudge_coords():616                  -            -            -         0    0.00              -              -
INFO 2019-07-04 18:07:01,580Z lrauvNc4ToNetcdf.py nudge_coords():668    1:            -            -            -      1610   10.85              -              -
INFO 2019-07-04 18:07:01,580Z lrauvNc4ToNetcdf.py nudge_coords():672 Points in final series = 1610
INFO 2019-07-04 18:07:01,593Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():506 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190703T034745/20190703T060328/data.csv
INFO 2019-07-04 18:07:01,626Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():529 Found 0 position values from the Tracking database
INFO 2019-07-04 18:07:01,630Z lrauvNc4ToNetcdf.py processResampleNc4File():1073 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-07-04 18:07:02,029Z lrauvNc4ToNetcdf.py processResampleNc4File():1076 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190701_20190703/20190703T044734/201907030447_201907030503_2S_scieng.nc