INFO 2019-07-19 18:18:09,742Z lrauvNc4ToNetcdf.py processResampleNc4File():937 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4 file...
INFO 2019-07-19 18:18:09,743Z lrauvNc4ToNetcdf.py processResampleNc4File():938 After copying to /tmp/201907170015_201907170407.nc4
INFO 2019-07-19 18:18:10,971Z lrauvNc4ToNetcdf.py processResampleNc4File():940 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
INFO 2019-07-19 18:18:21,263Z lrauvNc4ToNetcdf.py processResampleNc4File():945 Creating t variable of the time indexes
WARNING 2019-07-19 18:18:21,274Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
INFO 2019-07-19 18:18:21,339Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-07-19 18:18:21,542Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity
INFO 2019-07-19 18:18:21,747Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature
WARNING 2019-07-19 18:18:21,747Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
WARNING 2019-07-19 18:18:21,747Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
INFO 2019-07-19 18:18:21,811Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-07-19 18:18:21,812Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
INFO 2019-07-19 18:18:21,829Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-07-19 18:18:21,834Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-07-19 18:18:21,839Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-07-19 18:18:21,845Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-07-19 18:18:21,845Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
INFO 2019-07-19 18:18:21,966Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-07-19 18:18:22,449Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-07-19 18:18:22,449Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
WARNING 2019-07-19 18:18:22,450Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
WARNING 2019-07-19 18:18:22,450Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
INFO 2019-07-19 18:18:22,495Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-07-19 18:18:22,540Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-07-19 18:18:22,542Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-07-19 18:18:22,587Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-07-19 18:18:22,632Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-07-19 18:18:22,637Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-07-19 18:18:23,286Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-07-19 18:18:23,935Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-07-19 18:18:24,582Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-07-19 18:18:24,582Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
WARNING 2019-07-19 18:18:24,582Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
WARNING 2019-07-19 18:18:24,582Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
WARNING 2019-07-19 18:18:24,583Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
INFO 2019-07-19 18:18:24,592Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-07-19 18:18:24,600Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-07-19 18:18:24,600Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
INFO 2019-07-19 18:18:25,248Z lrauvNc4ToNetcdf.py createNav():465 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-19 18:18:25,900Z lrauvNc4ToNetcdf.py createNav():465 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-19 18:18:26,547Z lrauvNc4ToNetcdf.py createNav():465 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-19 18:18:26,549Z lrauvNc4ToNetcdf.py nudge_coords():582 /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407.nc4
INFO 2019-07-19 18:18:27,463Z lrauvNc4ToNetcdf.py nudge_coords():600 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-07-19 18:18:27,466Z lrauvNc4ToNetcdf.py nudge_coords():616                  -            -            -       809    5.44              -              -
INFO 2019-07-19 18:18:27,471Z lrauvNc4ToNetcdf.py nudge_coords():638    0:        0.363   -0.0000150    0.0000031        88    0.71           0.51           0.81
INFO 2019-07-19 18:18:27,477Z lrauvNc4ToNetcdf.py nudge_coords():638    1:        0.344   -0.0000071    0.0000069       147    0.98           0.81           1.29
INFO 2019-07-19 18:18:27,483Z lrauvNc4ToNetcdf.py nudge_coords():638    2:        0.356    0.0026364   -0.0011806      4987   33.60          -4.09          -6.51
INFO 2019-07-19 18:18:27,490Z lrauvNc4ToNetcdf.py nudge_coords():638    3:        0.363   -0.0001484    0.0000697       317    2.13           3.81           6.06
INFO 2019-07-19 18:18:27,496Z lrauvNc4ToNetcdf.py nudge_coords():638    4:        0.367    0.0000561   -0.0000384        84    0.56          -8.01         -12.73
INFO 2019-07-19 18:18:27,502Z lrauvNc4ToNetcdf.py nudge_coords():638    5:        0.377    0.0000489    0.0001477       797    5.36           3.21           5.10
INFO 2019-07-19 18:18:27,508Z lrauvNc4ToNetcdf.py nudge_coords():638    6:        0.351    0.0000491    0.0000317       732    4.92           0.75           1.19
INFO 2019-07-19 18:18:27,514Z lrauvNc4ToNetcdf.py nudge_coords():638    7:        0.378   -0.0000091    0.0000085        93    0.62           1.60           2.54
INFO 2019-07-19 18:18:27,520Z lrauvNc4ToNetcdf.py nudge_coords():638    8:        0.369    0.0020139   -0.0021583      4937   33.27          -7.56         -12.02
INFO 2019-07-19 18:18:27,526Z lrauvNc4ToNetcdf.py nudge_coords():638    9:        0.360    0.0001180    0.0000393       529    3.56           1.29           2.05
INFO 2019-07-19 18:18:27,532Z lrauvNc4ToNetcdf.py nudge_coords():638   10:        0.358    0.0010004    0.0002432      2590   17.48           1.63           2.58
INFO 2019-07-19 18:18:27,539Z lrauvNc4ToNetcdf.py nudge_coords():638   11:        0.343   -0.0000171   -0.0000385        43    0.28         -15.99         -25.26
INFO 2019-07-19 18:18:27,545Z lrauvNc4ToNetcdf.py nudge_coords():638   12:        0.338    0.0001030    0.0001432       825    5.55           3.03           4.78
INFO 2019-07-19 18:18:27,551Z lrauvNc4ToNetcdf.py nudge_coords():638   13:        0.314   -0.0000095   -0.0000083       128    0.86          -1.14          -1.80
INFO 2019-07-19 18:18:27,557Z lrauvNc4ToNetcdf.py nudge_coords():638   14:        0.365    0.0027712   -0.0015933      4923   33.16          -5.61          -8.90
INFO 2019-07-19 18:18:27,564Z lrauvNc4ToNetcdf.py nudge_coords():638   15:        0.376    0.0000277    0.0000073       454    3.05           0.28           0.44
INFO 2019-07-19 18:18:27,570Z lrauvNc4ToNetcdf.py nudge_coords():638   16:        0.314    0.0002880    0.0000846       625    4.21           2.35           3.72
INFO 2019-07-19 18:18:27,576Z lrauvNc4ToNetcdf.py nudge_coords():638   17:        0.368    0.0000980   -0.0000059       440    2.96          -0.23          -0.37
INFO 2019-07-19 18:18:27,582Z lrauvNc4ToNetcdf.py nudge_coords():638   18:        0.397    0.0000047   -0.0000050        59    0.39          -1.50          -2.38
INFO 2019-07-19 18:18:27,588Z lrauvNc4ToNetcdf.py nudge_coords():638   19:        0.372    0.0001301    0.0000110       800    5.38           0.24           0.38
INFO 2019-07-19 18:18:27,594Z lrauvNc4ToNetcdf.py nudge_coords():638   20:        0.361   -0.0000009    0.0000100        93    0.62           1.90           3.00
INFO 2019-07-19 18:18:27,600Z lrauvNc4ToNetcdf.py nudge_coords():638   21:        0.358    0.0000077   -0.0000014        53    0.35          -0.45          -0.72
INFO 2019-07-19 18:18:27,606Z lrauvNc4ToNetcdf.py nudge_coords():638   22:        0.358    0.0022124   -0.0035541      7138   48.08          -8.60         -13.70
INFO 2019-07-19 18:18:27,613Z lrauvNc4ToNetcdf.py nudge_coords():638   23:        0.369    0.0003605   -0.0001386       518    3.48          -4.63          -7.38
INFO 2019-07-19 18:18:27,619Z lrauvNc4ToNetcdf.py nudge_coords():668   25:            -            -            -      2080   14.00              -              -
INFO 2019-07-19 18:18:27,619Z lrauvNc4ToNetcdf.py nudge_coords():672 Points in final series = 34289
INFO 2019-07-19 18:18:27,638Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():506 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190716T231550/20190717T050702/data.csv
INFO 2019-07-19 18:18:27,666Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():529 Found 0 position values from the Tracking database
INFO 2019-07-19 18:18:27,671Z lrauvNc4ToNetcdf.py processResampleNc4File():1073 ['control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-07-19 18:18:27,801Z lrauvNc4ToNetcdf.py processResampleNc4File():1076 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T001550/201907170015_201907170407_2S_scieng.nc