INFO 2019-07-19 18:19:27,154Z lrauvNc4ToNetcdf.py processResampleNc4File():937 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4 file...
INFO 2019-07-19 18:19:27,155Z lrauvNc4ToNetcdf.py processResampleNc4File():938 After copying to /tmp/201907171533_201907171713.nc4
INFO 2019-07-19 18:19:28,256Z lrauvNc4ToNetcdf.py processResampleNc4File():940 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
INFO 2019-07-19 18:19:32,840Z lrauvNc4ToNetcdf.py processResampleNc4File():945 Creating t variable of the time indexes
WARNING 2019-07-19 18:19:32,848Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
INFO 2019-07-19 18:19:32,863Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-07-19 18:19:32,865Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable sea_water_salinity empty so skipping
INFO 2019-07-19 18:19:32,867Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable sea_water_temperature empty so skipping
WARNING 2019-07-19 18:19:32,867Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
WARNING 2019-07-19 18:19:32,867Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
INFO 2019-07-19 18:19:32,885Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-07-19 18:19:32,885Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
INFO 2019-07-19 18:19:32,893Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-07-19 18:19:32,897Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-07-19 18:19:32,902Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-07-19 18:19:32,907Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-07-19 18:19:32,907Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
INFO 2019-07-19 18:19:32,980Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-07-19 18:19:33,137Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-07-19 18:19:33,138Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
WARNING 2019-07-19 18:19:33,138Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
WARNING 2019-07-19 18:19:33,138Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
INFO 2019-07-19 18:19:33,143Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-07-19 18:19:33,147Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-07-19 18:19:33,149Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-07-19 18:19:33,154Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-07-19 18:19:33,158Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-07-19 18:19:33,162Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-07-19 18:19:33,440Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-07-19 18:19:33,722Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-07-19 18:19:34,000Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-07-19 18:19:34,001Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
WARNING 2019-07-19 18:19:34,001Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
WARNING 2019-07-19 18:19:34,001Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
WARNING 2019-07-19 18:19:34,002Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
INFO 2019-07-19 18:19:34,010Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-07-19 18:19:34,017Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-07-19 18:19:34,018Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
INFO 2019-07-19 18:19:34,314Z lrauvNc4ToNetcdf.py createNav():465 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-19 18:19:34,611Z lrauvNc4ToNetcdf.py createNav():465 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-19 18:19:34,908Z lrauvNc4ToNetcdf.py createNav():465 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-19 18:19:34,909Z lrauvNc4ToNetcdf.py nudge_coords():582 /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713.nc4
INFO 2019-07-19 18:19:35,364Z lrauvNc4ToNetcdf.py nudge_coords():600 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-07-19 18:19:35,366Z lrauvNc4ToNetcdf.py nudge_coords():616                  -            -            -         0    0.00              -              -
INFO 2019-07-19 18:19:35,370Z lrauvNc4ToNetcdf.py nudge_coords():638    0:        0.374    0.0000284    0.0000052       189    1.27           0.48           0.76
INFO 2019-07-19 18:19:35,376Z lrauvNc4ToNetcdf.py nudge_coords():638    1:        0.378    0.0000261    0.0000822      1023    6.88           1.40           2.21
INFO 2019-07-19 18:19:35,382Z lrauvNc4ToNetcdf.py nudge_coords():638    2:        0.329    0.0000363    0.0000239       510    3.43           0.82           1.29
INFO 2019-07-19 18:19:35,388Z lrauvNc4ToNetcdf.py nudge_coords():638    3:        0.363    0.0000127    0.0000141       132    0.89           1.87           2.96
INFO 2019-07-19 18:19:35,394Z lrauvNc4ToNetcdf.py nudge_coords():638    4:        0.357    0.0007319   -0.0008716      8207   55.27          -1.85          -2.92
INFO 2019-07-19 18:19:35,403Z lrauvNc4ToNetcdf.py nudge_coords():638    5:        0.362    0.0001160   -0.0001106      1849   12.44          -1.04          -1.65
INFO 2019-07-19 18:19:35,410Z lrauvNc4ToNetcdf.py nudge_coords():638    6:        0.358    0.0001397   -0.0002065      2669   17.96          -1.35          -2.13
INFO 2019-07-19 18:19:35,416Z lrauvNc4ToNetcdf.py nudge_coords():668    8:            -            -            -        54    0.36              -              -
INFO 2019-07-19 18:19:35,417Z lrauvNc4ToNetcdf.py nudge_coords():672 Points in final series = 14633
INFO 2019-07-19 18:19:35,435Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():506 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190717T143352/20190717T181355/data.csv
INFO 2019-07-19 18:19:35,496Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():529 Found 0 position values from the Tracking database
INFO 2019-07-19 18:19:35,500Z lrauvNc4ToNetcdf.py processResampleNc4File():1073 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-07-19 18:19:35,722Z lrauvNc4ToNetcdf.py processResampleNc4File():1076 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T153342/201907171533_201907171713_2S_scieng.nc