INFO 2019-07-19 18:19:41,304Z lrauvNc4ToNetcdf.py processResampleNc4File():937 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4 file...
INFO 2019-07-19 18:19:41,305Z lrauvNc4ToNetcdf.py processResampleNc4File():938 After copying to /tmp/201907171759_201907171847.nc4
INFO 2019-07-19 18:19:42,377Z lrauvNc4ToNetcdf.py processResampleNc4File():940 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
INFO 2019-07-19 18:19:44,802Z lrauvNc4ToNetcdf.py processResampleNc4File():945 Creating t variable of the time indexes
WARNING 2019-07-19 18:19:44,808Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
INFO 2019-07-19 18:19:44,823Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-07-19 18:19:44,824Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable sea_water_salinity empty so skipping
INFO 2019-07-19 18:19:44,826Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable sea_water_temperature empty so skipping
WARNING 2019-07-19 18:19:44,826Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
WARNING 2019-07-19 18:19:44,827Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
INFO 2019-07-19 18:19:44,838Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-07-19 18:19:44,839Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
INFO 2019-07-19 18:19:44,845Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-07-19 18:19:44,849Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-07-19 18:19:44,854Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-07-19 18:19:44,859Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
WARNING 2019-07-19 18:19:44,859Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
INFO 2019-07-19 18:19:44,901Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-07-19 18:19:44,982Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-07-19 18:19:44,982Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
WARNING 2019-07-19 18:19:44,982Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
WARNING 2019-07-19 18:19:44,983Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
INFO 2019-07-19 18:19:44,985Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable concentration_of_chromophoric_dissolved_organic_matter_in_sea_water empty so skipping
INFO 2019-07-19 18:19:44,986Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2019-07-19 18:19:44,988Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-07-19 18:19:44,990Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable VolumeScatCoeff117deg700nm empty so skipping
INFO 2019-07-19 18:19:44,992Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable mass_concentration_of_petroleum_hydrocarbons_in_sea_water empty so skipping
INFO 2019-07-19 18:19:44,994Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2019-07-19 18:19:45,135Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-07-19 18:19:45,274Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-07-19 18:19:45,415Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-07-19 18:19:45,415Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
WARNING 2019-07-19 18:19:45,415Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
WARNING 2019-07-19 18:19:45,416Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
WARNING 2019-07-19 18:19:45,416Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
INFO 2019-07-19 18:19:45,420Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable platform_battery_charge empty so skipping
INFO 2019-07-19 18:19:45,423Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable platform_battery_voltage empty so skipping
WARNING 2019-07-19 18:19:45,423Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
INFO 2019-07-19 18:19:45,582Z lrauvNc4ToNetcdf.py createNav():465 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-19 18:19:45,741Z lrauvNc4ToNetcdf.py createNav():465 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-19 18:19:45,898Z lrauvNc4ToNetcdf.py createNav():465 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-07-19 18:19:45,899Z lrauvNc4ToNetcdf.py nudge_coords():582 /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847.nc4
INFO 2019-07-19 18:19:46,193Z lrauvNc4ToNetcdf.py nudge_coords():600 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-07-19 18:19:46,195Z lrauvNc4ToNetcdf.py nudge_coords():616                  -            -            -       375    2.52              -              -
INFO 2019-07-19 18:19:46,198Z lrauvNc4ToNetcdf.py nudge_coords():638    0:        0.369    0.0001552    0.0000461       863    5.80           0.93           1.47
INFO 2019-07-19 18:19:46,204Z lrauvNc4ToNetcdf.py nudge_coords():638    1:        0.359    0.0001567    0.0000068       801    5.39           0.15           0.23
INFO 2019-07-19 18:19:46,210Z lrauvNc4ToNetcdf.py nudge_coords():638    2:        0.362    0.0001284   -0.0000128       799    5.37          -0.28          -0.44
INFO 2019-07-19 18:19:46,216Z lrauvNc4ToNetcdf.py nudge_coords():638    3:        0.329   -0.0000022   -0.0000065       114    0.76          -1.00          -1.59
INFO 2019-07-19 18:19:46,222Z lrauvNc4ToNetcdf.py nudge_coords():638    4:        0.326    0.0000115   -0.0000062        42    0.28          -2.64          -4.19
INFO 2019-07-19 18:19:46,228Z lrauvNc4ToNetcdf.py nudge_coords():668    6:            -            -            -      4225   28.46              -              -
INFO 2019-07-19 18:19:46,228Z lrauvNc4ToNetcdf.py nudge_coords():672 Points in final series = 7219
INFO 2019-07-19 18:19:46,244Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():506 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190717T165902/20190717T194739/data.csv
INFO 2019-07-19 18:19:46,275Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():529 Found 0 position values from the Tracking database
INFO 2019-07-19 18:19:46,279Z lrauvNc4ToNetcdf.py processResampleNc4File():1073 ['control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2019-07-19 18:19:46,468Z lrauvNc4ToNetcdf.py processResampleNc4File():1076 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190717T175902/201907171759_201907171847_2S_scieng.nc