INFO 2019-07-19 18:21:19,805Z lrauvNc4ToNetcdf.py processResampleNc4File():937 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 file... INFO 2019-07-19 18:21:19,806Z lrauvNc4ToNetcdf.py processResampleNc4File():938 After copying to /tmp/201907181255_201907181514.nc4 INFO 2019-07-19 18:21:20,833Z lrauvNc4ToNetcdf.py processResampleNc4File():940 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 INFO 2019-07-19 18:21:27,113Z lrauvNc4ToNetcdf.py processResampleNc4File():945 Creating t variable of the time indexes WARNING 2019-07-19 18:21:27,122Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_oxygen_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 INFO 2019-07-19 18:21:27,209Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2019-07-19 18:21:27,660Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity INFO 2019-07-19 18:21:28,108Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature WARNING 2019-07-19 18:21:28,108Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 WARNING 2019-07-19 18:21:28,108Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 INFO 2019-07-19 18:21:28,132Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle WARNING 2019-07-19 18:21:28,133Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 INFO 2019-07-19 18:21:28,148Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2019-07-19 18:21:28,154Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2019-07-19 18:21:28,158Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2019-07-19 18:21:28,163Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude WARNING 2019-07-19 18:21:28,164Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'downwelling_photosynthetic_photon_flux_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 INFO 2019-07-19 18:21:28,215Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2019-07-19 18:21:28,381Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate WARNING 2019-07-19 18:21:28,381Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 WARNING 2019-07-19 18:21:28,381Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 WARNING 2019-07-19 18:21:28,382Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 INFO 2019-07-19 18:21:28,477Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-07-19 18:21:28,571Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-07-19 18:21:28,572Z lrauvNc4ToNetcdf.py processResampleNc4File():983 Variable BackscatteringCoeff700nm empty so skipping INFO 2019-07-19 18:21:28,666Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-07-19 18:21:28,761Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-07-19 18:21:28,765Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2019-07-19 18:21:29,155Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2019-07-19 18:21:29,545Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2019-07-19 18:21:29,934Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources WARNING 2019-07-19 18:21:29,934Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 WARNING 2019-07-19 18:21:29,934Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 WARNING 2019-07-19 18:21:29,935Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 WARNING 2019-07-19 18:21:29,935Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 INFO 2019-07-19 18:21:29,943Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2019-07-19 18:21:29,950Z lrauvNc4ToNetcdf.py processResampleNc4File():1020 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage WARNING 2019-07-19 18:21:29,950Z lrauvNc4ToNetcdf.py processResampleNc4File():1022 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 INFO 2019-07-19 18:21:30,357Z lrauvNc4ToNetcdf.py createNav():465 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-07-19 18:21:30,750Z lrauvNc4ToNetcdf.py createNav():465 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-07-19 18:21:31,144Z lrauvNc4ToNetcdf.py createNav():465 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-07-19 18:21:31,146Z lrauvNc4ToNetcdf.py nudge_coords():582 /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514.nc4 INFO 2019-07-19 18:21:31,731Z lrauvNc4ToNetcdf.py nudge_coords():600 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-07-19 18:21:31,732Z lrauvNc4ToNetcdf.py nudge_coords():616 - - - 0 0.00 - - INFO 2019-07-19 18:21:31,736Z lrauvNc4ToNetcdf.py nudge_coords():638 0: 0.363 -0.0000025 -0.0000068 40 0.26 -3.01 -4.79 INFO 2019-07-19 18:21:31,742Z lrauvNc4ToNetcdf.py nudge_coords():638 1: 0.304 -0.0000055 -0.0000433 189 1.27 -3.97 -6.33 INFO 2019-07-19 18:21:31,748Z lrauvNc4ToNetcdf.py nudge_coords():638 2: 0.354 -0.0001191 -0.0000624 890 5.99 -1.21 -1.93 INFO 2019-07-19 18:21:31,754Z lrauvNc4ToNetcdf.py nudge_coords():638 3: 0.386 -0.0000257 -0.0000044 138 0.92 -0.55 -0.87 INFO 2019-07-19 18:21:31,759Z lrauvNc4ToNetcdf.py nudge_coords():638 4: 0.365 -0.0001089 -0.0000855 3366 22.66 -0.44 -0.70 INFO 2019-07-19 18:21:31,766Z lrauvNc4ToNetcdf.py nudge_coords():638 5: 0.356 0.0002308 0.0001285 988 6.65 2.25 3.58 INFO 2019-07-19 18:21:31,772Z lrauvNc4ToNetcdf.py nudge_coords():638 6: 0.369 0.0001604 0.0000931 801 5.39 2.01 3.20 INFO 2019-07-19 18:21:31,778Z lrauvNc4ToNetcdf.py nudge_coords():638 7: 0.364 0.0001804 0.0000245 799 5.37 0.53 0.85 INFO 2019-07-19 18:21:31,784Z lrauvNc4ToNetcdf.py nudge_coords():638 8: 0.317 0.0000811 0.0000076 484 3.25 0.27 0.43 INFO 2019-07-19 18:21:31,790Z lrauvNc4ToNetcdf.py nudge_coords():638 9: 0.351 0.0000244 0.0000152 71 0.47 3.75 5.95 INFO 2019-07-19 18:21:31,795Z lrauvNc4ToNetcdf.py nudge_coords():638 10: 0.369 0.0003342 -0.0006462 3452 23.24 -3.25 -5.15 INFO 2019-07-19 18:21:31,802Z lrauvNc4ToNetcdf.py nudge_coords():638 11: 0.386 -0.0001398 0.0002460 787 5.29 5.43 8.61 INFO 2019-07-19 18:21:31,808Z lrauvNc4ToNetcdf.py nudge_coords():638 12: 0.308 -0.0002082 0.0001957 803 5.40 4.24 6.71 INFO 2019-07-19 18:21:31,814Z lrauvNc4ToNetcdf.py nudge_coords():638 13: 0.374 -0.0000140 0.0000079 91 0.61 1.52 2.41 INFO 2019-07-19 18:21:31,819Z lrauvNc4ToNetcdf.py nudge_coords():638 14: 0.331 0.0000485 0.0000442 627 4.22 1.23 1.94 INFO 2019-07-19 18:21:31,825Z lrauvNc4ToNetcdf.py nudge_coords():638 15: 0.362 0.0004683 -0.0003176 3167 21.33 -1.73 -2.76 INFO 2019-07-19 18:21:31,832Z lrauvNc4ToNetcdf.py nudge_coords():638 16: 0.343 -0.0000252 0.0000745 480 3.23 2.68 4.28 INFO 2019-07-19 18:21:31,838Z lrauvNc4ToNetcdf.py nudge_coords():638 17: 0.326 0.0002289 -0.0008548 2256 15.19 -6.54 -10.43 INFO 2019-07-19 18:21:31,844Z lrauvNc4ToNetcdf.py nudge_coords():638 18: 0.365 0.0001459 0.0000090 922 6.20 0.17 0.27 INFO 2019-07-19 18:21:31,850Z lrauvNc4ToNetcdf.py nudge_coords():668 20: - - - 93 0.62 - - INFO 2019-07-19 18:21:31,850Z lrauvNc4ToNetcdf.py nudge_coords():672 Points in final series = 20444 INFO 2019-07-19 18:21:31,867Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():506 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190718T115555/20190718T161445/data.csv INFO 2019-07-19 18:21:31,895Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():529 Found 0 position values from the Tracking database INFO 2019-07-19 18:21:31,899Z lrauvNc4ToNetcdf.py processResampleNc4File():1073 ['control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2019-07-19 18:21:32,304Z lrauvNc4ToNetcdf.py processResampleNc4File():1076 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190716_20190718/20190718T125544/201907181255_201907181514_2S_scieng.nc