INFO 2019-10-08 18:34:29,836Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190824T230839/201908242308_201908250116.nc4 file... INFO 2019-10-08 18:34:29,837Z lrauvNc4ToNetcdf.py processResampleNc4File():960 After copying to /tmp/201908242308_201908250116.nc4 INFO 2019-10-08 18:34:31,009Z lrauvNc4ToNetcdf.py processResampleNc4File():962 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190824T230839/201908242308_201908250116.nc4 INFO 2019-10-08 18:34:36,993Z lrauvNc4ToNetcdf.py processResampleNc4File():967 Creating t variable of the time indexes INFO 2019-10-08 18:34:37,119Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen INFO 2019-10-08 18:34:37,644Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity INFO 2019-10-08 18:34:38,171Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature WARNING 2019-10-08 18:34:38,171Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190824T230839/201908242308_201908250116.nc4 WARNING 2019-10-08 18:34:38,171Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190824T230839/201908242308_201908250116.nc4 WARNING 2019-10-08 18:34:38,171Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190824T230839/201908242308_201908250116.nc4 INFO 2019-10-08 18:34:38,543Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR WARNING 2019-10-08 18:34:38,543Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190824T230839/201908242308_201908250116.nc4 WARNING 2019-10-08 18:34:38,543Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190824T230839/201908242308_201908250116.nc4 WARNING 2019-10-08 18:34:38,543Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190824T230839/201908242308_201908250116.nc4 INFO 2019-10-08 18:34:38,656Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-10-08 18:34:38,768Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-10-08 18:34:38,879Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter BackscatteringCoeff700nm renaming to BackscatteringCoeff700nm INFO 2019-10-08 18:34:38,992Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-10-08 18:34:39,105Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-10-08 18:34:39,106Z lrauvNc4ToNetcdf.py nudge_coords():592 /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190824T230839/201908242308_201908250116.nc4 DEBUG 2019-10-08 18:34:39,367Z lrauvNc4ToNetcdf.py var_series():580 longitude: rad_to_deg = True DEBUG 2019-10-08 18:34:39,625Z lrauvNc4ToNetcdf.py var_series():580 latitude: rad_to_deg = True DEBUG 2019-10-08 18:34:39,664Z lrauvNc4ToNetcdf.py var_series():580 longitude_fix: rad_to_deg = False DEBUG 2019-10-08 18:34:39,700Z lrauvNc4ToNetcdf.py var_series():580 latitude_fix: rad_to_deg = False INFO 2019-10-08 18:34:39,700Z lrauvNc4ToNetcdf.py nudge_coords():610 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-10-08 18:34:39,702Z lrauvNc4ToNetcdf.py nudge_coords():626 - - - 281 1.88 - - INFO 2019-10-08 18:34:39,706Z lrauvNc4ToNetcdf.py nudge_coords():648 0: 0.350 0.0000022 0.0000035 83 0.56 -1.15 1.16 INFO 2019-10-08 18:34:39,712Z lrauvNc4ToNetcdf.py nudge_coords():648 1: 0.353 -0.0001759 -0.0003438 2983 20.11 3.13 -3.17 INFO 2019-10-08 18:34:39,718Z lrauvNc4ToNetcdf.py nudge_coords():648 2: 0.327 -0.0000021 0.0000027 61 0.41 -1.23 1.24 INFO 2019-10-08 18:34:39,724Z lrauvNc4ToNetcdf.py nudge_coords():648 3: 0.335 -0.0002172 -0.0003072 2539 17.10 3.29 -3.33 INFO 2019-10-08 18:34:39,731Z lrauvNc4ToNetcdf.py nudge_coords():648 4: 0.348 0.0000198 0.0000080 345 2.32 -0.64 0.64 INFO 2019-10-08 18:34:39,737Z lrauvNc4ToNetcdf.py nudge_coords():648 5: 0.370 -0.0009717 -0.0007515 2365 15.93 8.63 -8.74 INFO 2019-10-08 18:34:39,743Z lrauvNc4ToNetcdf.py nudge_coords():648 6: 0.357 0.0001307 -0.0002552 566 3.81 12.26 -12.42 INFO 2019-10-08 18:34:39,749Z lrauvNc4ToNetcdf.py nudge_coords():648 7: 0.372 -0.0001785 -0.0002117 386 2.60 14.87 -15.07 INFO 2019-10-08 18:34:39,755Z lrauvNc4ToNetcdf.py nudge_coords():648 8: 0.351 0.0002398 -0.0005722 1212 8.16 12.83 -13.00 INFO 2019-10-08 18:34:39,761Z lrauvNc4ToNetcdf.py nudge_coords():648 9: 0.320 0.0000095 -0.0000710 166 1.11 11.66 -11.82 INFO 2019-10-08 18:34:39,767Z lrauvNc4ToNetcdf.py nudge_coords():648 10: 0.353 -0.0005154 -0.0006372 4657 31.56 3.69 -3.74 INFO 2019-10-08 18:34:39,774Z lrauvNc4ToNetcdf.py nudge_coords():648 11: 0.314 -0.0000923 -0.0001608 388 2.61 11.28 -11.43 INFO 2019-10-08 18:34:39,780Z lrauvNc4ToNetcdf.py nudge_coords():648 12: 0.358 -0.0000038 -0.0000147 41 0.27 9.97 -10.11 INFO 2019-10-08 18:34:39,786Z lrauvNc4ToNetcdf.py nudge_coords():648 13: 0.370 -0.0000117 -0.0002495 810 5.45 8.37 -8.49 INFO 2019-10-08 18:34:39,792Z lrauvNc4ToNetcdf.py nudge_coords():648 14: 0.372 -0.0000758 -0.0002688 809 5.44 9.03 -9.16 INFO 2019-10-08 18:34:39,798Z lrauvNc4ToNetcdf.py nudge_coords():648 15: 0.353 0.0000115 -0.0002755 807 5.43 9.27 -9.40 INFO 2019-10-08 18:34:39,804Z lrauvNc4ToNetcdf.py nudge_coords():678 17: - - - 484 3.25 - - INFO 2019-10-08 18:34:39,805Z lrauvNc4ToNetcdf.py nudge_coords():682 Points in final series = 18983 DEBUG 2019-10-08 18:34:39,805Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():508 Constructing trackingdb url to 3600 seconds beyond time range of file INFO 2019-10-08 18:34:39,823Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():516 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190824T220840/20190825T021646/data.csv INFO 2019-10-08 18:34:39,866Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():539 Found 0 position values from the Tracking database INFO 2019-10-08 18:34:39,871Z lrauvNc4ToNetcdf.py processResampleNc4File():1095 ['oxygen', 'salinity', 'temperature', 'PAR', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'BackscatteringCoeff700nm', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'latitude', 'longitude', 'depth', 'time'] DEBUG 2019-10-08 18:34:39,871Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190824T230839/201908242308_201908250116_10S_sci.nc DEBUG 2019-10-08 18:34:39,879Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time DEBUG 2019-10-08 18:34:39,887Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable oxygen DEBUG 2019-10-08 18:34:39,890Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable salinity DEBUG 2019-10-08 18:34:39,892Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable temperature DEBUG 2019-10-08 18:34:39,895Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR DEBUG 2019-10-08 18:34:39,897Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter DEBUG 2019-10-08 18:34:39,899Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll DEBUG 2019-10-08 18:34:39,901Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable BackscatteringCoeff700nm DEBUG 2019-10-08 18:34:39,903Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm DEBUG 2019-10-08 18:34:39,909Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons DEBUG 2019-10-08 18:34:39,912Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude DEBUG 2019-10-08 18:34:39,914Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude DEBUG 2019-10-08 18:34:39,917Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth DEBUG 2019-10-08 18:34:39,919Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata INFO 2019-10-08 18:34:40,051Z lrauvNc4ToNetcdf.py processResampleNc4File():1098 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190824T230839/201908242308_201908250116_10S_sci.nc