INFO 2019-10-08 18:34:42,225Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190825T011646/201908250116_201908251721.nc4 file... INFO 2019-10-08 18:34:42,226Z lrauvNc4ToNetcdf.py processResampleNc4File():960 After copying to /tmp/201908250116_201908251721.nc4 INFO 2019-10-08 18:34:43,356Z lrauvNc4ToNetcdf.py processResampleNc4File():962 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190825T011646/201908250116_201908251721.nc4 INFO 2019-10-08 18:35:26,979Z lrauvNc4ToNetcdf.py processResampleNc4File():967 Creating t variable of the time indexes INFO 2019-10-08 18:35:28,060Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen INFO 2019-10-08 18:35:33,041Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity INFO 2019-10-08 18:35:37,955Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature WARNING 2019-10-08 18:35:37,956Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190825T011646/201908250116_201908251721.nc4 WARNING 2019-10-08 18:35:37,956Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190825T011646/201908250116_201908251721.nc4 WARNING 2019-10-08 18:35:37,956Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190825T011646/201908250116_201908251721.nc4 INFO 2019-10-08 18:35:40,720Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR WARNING 2019-10-08 18:35:40,720Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190825T011646/201908250116_201908251721.nc4 WARNING 2019-10-08 18:35:40,721Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190825T011646/201908250116_201908251721.nc4 WARNING 2019-10-08 18:35:40,721Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190825T011646/201908250116_201908251721.nc4 INFO 2019-10-08 18:35:41,727Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-10-08 18:35:42,740Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-10-08 18:35:43,742Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter BackscatteringCoeff700nm renaming to BackscatteringCoeff700nm INFO 2019-10-08 18:35:44,750Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-10-08 18:35:45,757Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-10-08 18:35:45,761Z lrauvNc4ToNetcdf.py nudge_coords():592 /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190825T011646/201908250116_201908251721.nc4 DEBUG 2019-10-08 18:35:47,511Z lrauvNc4ToNetcdf.py var_series():580 longitude: rad_to_deg = True DEBUG 2019-10-08 18:35:49,229Z lrauvNc4ToNetcdf.py var_series():580 latitude: rad_to_deg = True DEBUG 2019-10-08 18:35:49,274Z lrauvNc4ToNetcdf.py var_series():580 longitude_fix: rad_to_deg = False DEBUG 2019-10-08 18:35:49,312Z lrauvNc4ToNetcdf.py var_series():580 latitude_fix: rad_to_deg = False INFO 2019-10-08 18:35:49,312Z lrauvNc4ToNetcdf.py nudge_coords():610 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-10-08 18:35:49,314Z lrauvNc4ToNetcdf.py nudge_coords():626 - - - 238 1.60 - - INFO 2019-10-08 18:35:49,331Z lrauvNc4ToNetcdf.py nudge_coords():648 0: 0.326 -0.0000043 -0.0000502 155 1.04 8.80 -8.92 INFO 2019-10-08 18:35:49,339Z lrauvNc4ToNetcdf.py nudge_coords():648 1: 0.372 -0.0021095 0.0014813 9165 61.73 -4.39 4.45 INFO 2019-10-08 18:35:49,346Z lrauvNc4ToNetcdf.py nudge_coords():648 2: 0.353 0.0002282 -0.0002133 875 5.89 6.63 -6.72 INFO 2019-10-08 18:35:49,352Z lrauvNc4ToNetcdf.py nudge_coords():648 3: 0.355 0.0002752 -0.0002063 801 5.48 6.89 -6.98 INFO 2019-10-08 18:35:49,359Z lrauvNc4ToNetcdf.py nudge_coords():648 4: 0.370 0.0002765 -0.0002333 806 5.46 7.81 -7.92 INFO 2019-10-08 18:35:49,365Z lrauvNc4ToNetcdf.py nudge_coords():648 5: 0.367 0.0000574 -0.0000332 155 1.04 5.84 -5.91 INFO 2019-10-08 18:35:49,372Z lrauvNc4ToNetcdf.py nudge_coords():648 6: 0.338 0.0000498 -0.0000345 123 0.83 7.64 -7.74 INFO 2019-10-08 18:35:49,378Z lrauvNc4ToNetcdf.py nudge_coords():648 7: 0.369 0.0000226 -0.0007123 5732 38.60 3.37 -3.42 INFO 2019-10-08 18:35:49,385Z lrauvNc4ToNetcdf.py nudge_coords():648 8: 0.367 -0.0004598 0.0006789 4613 31.06 -3.99 4.05 INFO 2019-10-08 18:35:49,392Z lrauvNc4ToNetcdf.py nudge_coords():648 9: 0.379 0.0000685 -0.0001957 527 3.54 10.07 -10.23 INFO 2019-10-08 18:35:49,398Z lrauvNc4ToNetcdf.py nudge_coords():648 10: 0.343 -0.0015794 0.0014781 4770 32.12 -8.39 8.53 INFO 2019-10-08 18:35:49,406Z lrauvNc4ToNetcdf.py nudge_coords():648 11: 0.334 0.0001910 -0.0001728 404 2.72 11.59 -11.78 INFO 2019-10-08 18:35:49,412Z lrauvNc4ToNetcdf.py nudge_coords():648 12: 0.360 -0.0016003 0.0013950 4658 31.36 -8.12 8.24 INFO 2019-10-08 18:35:49,419Z lrauvNc4ToNetcdf.py nudge_coords():648 13: 0.364 0.0005753 -0.0002082 1237 8.32 4.57 -4.63 INFO 2019-10-08 18:35:49,426Z lrauvNc4ToNetcdf.py nudge_coords():648 14: 0.363 0.0002145 -0.0001627 830 5.59 5.31 -5.40 INFO 2019-10-08 18:35:49,432Z lrauvNc4ToNetcdf.py nudge_coords():648 15: 0.371 0.0000556 -0.0000494 164 1.10 8.17 -8.29 INFO 2019-10-08 18:35:49,439Z lrauvNc4ToNetcdf.py nudge_coords():648 16: 0.356 0.0000213 -0.0000147 71 0.48 5.62 -5.71 INFO 2019-10-08 18:35:49,445Z lrauvNc4ToNetcdf.py nudge_coords():648 17: 0.358 -0.0006273 0.0015972 7130 48.02 -6.07 6.16 INFO 2019-10-08 18:35:49,453Z lrauvNc4ToNetcdf.py nudge_coords():648 18: 0.300 0.0004002 -0.0002268 548 3.68 11.23 -11.41 INFO 2019-10-08 18:35:49,459Z lrauvNc4ToNetcdf.py nudge_coords():648 19: 0.374 0.0013241 0.0006808 7107 47.86 -2.59 2.64 INFO 2019-10-08 18:35:49,467Z lrauvNc4ToNetcdf.py nudge_coords():648 20: 0.361 0.0005099 -0.0005146 566 3.82 24.56 -24.99 INFO 2019-10-08 18:35:49,473Z lrauvNc4ToNetcdf.py nudge_coords():648 21: 0.357 0.0027986 -0.0012467 7587 51.09 4.45 -4.52 INFO 2019-10-08 18:35:49,481Z lrauvNc4ToNetcdf.py nudge_coords():648 22: 0.357 0.0000802 -0.0000382 113 0.76 9.14 -9.28 INFO 2019-10-08 18:35:49,488Z lrauvNc4ToNetcdf.py nudge_coords():648 23: 0.343 0.0023996 -0.0017551 7716 51.96 6.17 -6.26 INFO 2019-10-08 18:35:49,495Z lrauvNc4ToNetcdf.py nudge_coords():648 24: 0.377 0.0000608 -0.0000110 72 0.48 4.15 -4.21 INFO 2019-10-08 18:35:49,502Z lrauvNc4ToNetcdf.py nudge_coords():648 25: 0.364 0.0024573 -0.0011273 6864 46.22 4.45 -4.52 INFO 2019-10-08 18:35:49,509Z lrauvNc4ToNetcdf.py nudge_coords():648 26: 0.345 0.0001475 -0.0000120 501 3.37 0.65 -0.66 INFO 2019-10-08 18:35:49,516Z lrauvNc4ToNetcdf.py nudge_coords():648 27: 0.348 0.0010697 0.0003987 7313 49.25 -1.48 1.50 INFO 2019-10-08 18:35:49,523Z lrauvNc4ToNetcdf.py nudge_coords():648 28: 0.366 -0.0001050 -0.0000573 454 3.06 3.42 -3.48 INFO 2019-10-08 18:35:49,530Z lrauvNc4ToNetcdf.py nudge_coords():648 29: 0.365 -0.0005394 0.0016533 7509 50.58 -5.96 6.06 INFO 2019-10-08 18:35:49,537Z lrauvNc4ToNetcdf.py nudge_coords():648 30: 0.338 0.0000168 0.0000302 218 1.46 -3.76 3.82 INFO 2019-10-08 18:35:49,544Z lrauvNc4ToNetcdf.py nudge_coords():648 31: 0.365 -0.0002439 0.0016879 7271 48.96 -6.28 6.39 INFO 2019-10-08 18:35:49,552Z lrauvNc4ToNetcdf.py nudge_coords():648 32: 0.379 0.0000762 0.0000070 348 2.34 -0.55 0.55 INFO 2019-10-08 18:35:49,559Z lrauvNc4ToNetcdf.py nudge_coords():648 33: 0.363 -0.0000553 0.0014336 7311 49.24 -5.30 5.40 INFO 2019-10-08 18:35:49,566Z lrauvNc4ToNetcdf.py nudge_coords():648 34: 0.369 0.0001405 -0.0000505 341 2.29 4.01 -4.08 INFO 2019-10-08 18:35:49,573Z lrauvNc4ToNetcdf.py nudge_coords():648 35: 0.328 0.0003015 -0.0001495 7284 49.05 0.56 -0.56 INFO 2019-10-08 18:35:49,580Z lrauvNc4ToNetcdf.py nudge_coords():648 36: 0.344 0.0000402 0.0000003 116 0.78 -0.08 0.08 INFO 2019-10-08 18:35:49,587Z lrauvNc4ToNetcdf.py nudge_coords():648 37: 0.344 0.0009779 -0.0004115 7227 48.67 1.55 -1.57 INFO 2019-10-08 18:35:49,595Z lrauvNc4ToNetcdf.py nudge_coords():648 38: 0.340 0.0000880 0.0000083 374 2.51 -0.61 0.61 INFO 2019-10-08 18:35:49,602Z lrauvNc4ToNetcdf.py nudge_coords():648 39: 0.342 0.0012017 0.0002160 7102 47.85 -0.82 0.84 INFO 2019-10-08 18:35:49,610Z lrauvNc4ToNetcdf.py nudge_coords():648 40: 0.364 -0.0001510 0.0000788 506 3.40 -4.23 4.29 INFO 2019-10-08 18:35:49,617Z lrauvNc4ToNetcdf.py nudge_coords():648 41: 0.329 -0.0004808 0.0008138 7311 49.29 -3.01 3.06 INFO 2019-10-08 18:35:49,625Z lrauvNc4ToNetcdf.py nudge_coords():648 42: 0.365 -0.0000137 0.0000960 343 2.31 -7.59 7.71 INFO 2019-10-08 18:35:49,632Z lrauvNc4ToNetcdf.py nudge_coords():648 43: 0.368 -0.0012089 0.0018140 7648 51.50 -6.42 6.53 INFO 2019-10-08 18:35:49,641Z lrauvNc4ToNetcdf.py nudge_coords():648 44: 0.351 0.0002892 0.0002758 857 5.77 -8.70 8.85 INFO 2019-10-08 18:35:49,649Z lrauvNc4ToNetcdf.py nudge_coords():678 46: - - - 57 0.38 - - INFO 2019-10-08 18:35:49,649Z lrauvNc4ToNetcdf.py nudge_coords():682 Points in final series = 142880 DEBUG 2019-10-08 18:35:49,651Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():508 Constructing trackingdb url to 3600 seconds beyond time range of file INFO 2019-10-08 18:35:49,669Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():516 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190825T001646/20190825T182100/data.csv INFO 2019-10-08 18:35:49,700Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():539 Found 0 position values from the Tracking database INFO 2019-10-08 18:35:49,712Z lrauvNc4ToNetcdf.py processResampleNc4File():1095 ['oxygen', 'salinity', 'temperature', 'PAR', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'BackscatteringCoeff700nm', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'latitude', 'longitude', 'depth', 'time'] DEBUG 2019-10-08 18:35:49,716Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190825T011646/201908250116_201908251721_10S_sci.nc DEBUG 2019-10-08 18:35:49,722Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time DEBUG 2019-10-08 18:35:49,759Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable oxygen DEBUG 2019-10-08 18:35:49,764Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable salinity DEBUG 2019-10-08 18:35:49,768Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable temperature DEBUG 2019-10-08 18:35:49,772Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR DEBUG 2019-10-08 18:35:49,775Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter DEBUG 2019-10-08 18:35:49,778Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll DEBUG 2019-10-08 18:35:49,781Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable BackscatteringCoeff700nm DEBUG 2019-10-08 18:35:49,785Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm DEBUG 2019-10-08 18:35:49,798Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons DEBUG 2019-10-08 18:35:49,801Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude DEBUG 2019-10-08 18:35:49,805Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude DEBUG 2019-10-08 18:35:49,809Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth DEBUG 2019-10-08 18:35:49,812Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata INFO 2019-10-08 18:35:49,961Z lrauvNc4ToNetcdf.py processResampleNc4File():1098 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190825T011646/201908250116_201908251721_10S_sci.nc