INFO 2019-10-08 18:37:30,843Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 file...
INFO 2019-10-08 18:37:30,843Z lrauvNc4ToNetcdf.py processResampleNc4File():960 After copying to /tmp/201908261654_201908261737.nc4
INFO 2019-10-08 18:37:32,090Z lrauvNc4ToNetcdf.py processResampleNc4File():962 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4
INFO 2019-10-08 18:37:34,367Z lrauvNc4ToNetcdf.py processResampleNc4File():967 Creating t variable of the time indexes
INFO 2019-10-08 18:37:34,421Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2019-10-08 18:37:34,625Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity
INFO 2019-10-08 18:37:34,831Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature
WARNING 2019-10-08 18:37:34,831Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4
WARNING 2019-10-08 18:37:34,831Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4
WARNING 2019-10-08 18:37:34,831Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4
INFO 2019-10-08 18:37:34,974Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
WARNING 2019-10-08 18:37:34,974Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4
WARNING 2019-10-08 18:37:34,975Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4
WARNING 2019-10-08 18:37:34,975Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4
INFO 2019-10-08 18:37:35,027Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-10-08 18:37:35,079Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-10-08 18:37:35,130Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter BackscatteringCoeff700nm renaming to BackscatteringCoeff700nm
INFO 2019-10-08 18:37:35,180Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-10-08 18:37:35,229Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-10-08 18:37:35,231Z lrauvNc4ToNetcdf.py nudge_coords():592 /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4
DEBUG 2019-10-08 18:37:35,363Z lrauvNc4ToNetcdf.py var_series():580 longitude: rad_to_deg = True
DEBUG 2019-10-08 18:37:35,491Z lrauvNc4ToNetcdf.py var_series():580 latitude: rad_to_deg = True
DEBUG 2019-10-08 18:37:35,532Z lrauvNc4ToNetcdf.py var_series():580 longitude_fix: rad_to_deg = False
DEBUG 2019-10-08 18:37:35,570Z lrauvNc4ToNetcdf.py var_series():580 latitude_fix: rad_to_deg = False
INFO 2019-10-08 18:37:35,570Z lrauvNc4ToNetcdf.py nudge_coords():610 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-10-08 18:37:35,572Z lrauvNc4ToNetcdf.py nudge_coords():626                  -            -            -         3    0.01              -              -
INFO 2019-10-08 18:37:35,574Z lrauvNc4ToNetcdf.py nudge_coords():648    0:        0.343   -0.0002060    0.0001797       571    3.85          -8.51           8.65
INFO 2019-10-08 18:37:35,581Z lrauvNc4ToNetcdf.py nudge_coords():648    1:        0.336   -0.0013609   -0.0007173      5061   34.08           3.84          -3.90
INFO 2019-10-08 18:37:35,587Z lrauvNc4ToNetcdf.py nudge_coords():648    2:        0.367   -0.0000194    0.0002367       641    4.31         -10.01          10.17
INFO 2019-10-08 18:37:35,593Z lrauvNc4ToNetcdf.py nudge_coords():678    4:            -            -            -       165    1.11              -              -
INFO 2019-10-08 18:37:35,593Z lrauvNc4ToNetcdf.py nudge_coords():682 Points in final series = 6438
DEBUG 2019-10-08 18:37:35,596Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():508 Constructing trackingdb url to 3600 seconds beyond time range of file
INFO 2019-10-08 18:37:35,613Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():516 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190826T155434/20190826T183757/data.csv
INFO 2019-10-08 18:37:35,638Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():539 Found 0 position values from the Tracking database
INFO 2019-10-08 18:37:35,642Z lrauvNc4ToNetcdf.py processResampleNc4File():1095 ['oxygen', 'salinity', 'temperature', 'PAR', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'BackscatteringCoeff700nm', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'latitude', 'longitude', 'depth', 'time']
DEBUG 2019-10-08 18:37:35,643Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737_10S_sci.nc
DEBUG 2019-10-08 18:37:35,647Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time
DEBUG 2019-10-08 18:37:35,661Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable oxygen
DEBUG 2019-10-08 18:37:35,668Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable salinity
DEBUG 2019-10-08 18:37:35,673Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable temperature
DEBUG 2019-10-08 18:37:35,677Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR
DEBUG 2019-10-08 18:37:35,682Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter
DEBUG 2019-10-08 18:37:35,687Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll
DEBUG 2019-10-08 18:37:35,692Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable BackscatteringCoeff700nm
DEBUG 2019-10-08 18:37:35,697Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm
DEBUG 2019-10-08 18:37:35,706Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons
DEBUG 2019-10-08 18:37:35,711Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude
DEBUG 2019-10-08 18:37:35,716Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude
DEBUG 2019-10-08 18:37:35,721Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth
DEBUG 2019-10-08 18:37:35,726Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata
INFO 2019-10-08 18:37:35,879Z lrauvNc4ToNetcdf.py processResampleNc4File():1098 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737_10S_sci.nc