INFO 2019-10-08 18:22:42,564Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 file... INFO 2019-10-08 18:22:42,565Z lrauvNc4ToNetcdf.py processResampleNc4File():960 After copying to /tmp/201908261654_201908261737.nc4 INFO 2019-10-08 18:22:43,859Z lrauvNc4ToNetcdf.py processResampleNc4File():962 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 INFO 2019-10-08 18:22:46,138Z lrauvNc4ToNetcdf.py processResampleNc4File():967 Creating t variable of the time indexes INFO 2019-10-08 18:22:46,193Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen INFO 2019-10-08 18:22:46,206Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2019-10-08 18:22:46,419Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity INFO 2019-10-08 18:22:46,626Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature WARNING 2019-10-08 18:22:46,626Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 WARNING 2019-10-08 18:22:46,626Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 INFO 2019-10-08 18:22:46,644Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle WARNING 2019-10-08 18:22:46,645Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 INFO 2019-10-08 18:22:46,650Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2019-10-08 18:22:46,656Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2019-10-08 18:22:46,662Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2019-10-08 18:22:46,668Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2019-10-08 18:22:46,799Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2019-10-08 18:22:46,826Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2019-10-08 18:22:46,921Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate WARNING 2019-10-08 18:22:46,921Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 WARNING 2019-10-08 18:22:46,922Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 WARNING 2019-10-08 18:22:46,922Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 INFO 2019-10-08 18:22:46,969Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-10-08 18:22:47,016Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-10-08 18:22:47,063Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter BackscatteringCoeff700nm renaming to BackscatteringCoeff700nm INFO 2019-10-08 18:22:47,110Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-10-08 18:22:47,157Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-10-08 18:22:47,163Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources INFO 2019-10-08 18:22:47,293Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2019-10-08 18:22:47,424Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2019-10-08 18:22:47,554Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources WARNING 2019-10-08 18:22:47,554Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 WARNING 2019-10-08 18:22:47,554Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 WARNING 2019-10-08 18:22:47,554Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 WARNING 2019-10-08 18:22:47,555Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 INFO 2019-10-08 18:22:47,565Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2019-10-08 18:22:47,572Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage WARNING 2019-10-08 18:22:47,573Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 DEBUG 2019-10-08 18:22:47,723Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for pitch DEBUG 2019-10-08 18:22:47,731Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for pitch INFO 2019-10-08 18:22:47,732Z lrauvNc4ToNetcdf.py createNav():472 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} DEBUG 2019-10-08 18:22:47,876Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for roll DEBUG 2019-10-08 18:22:47,883Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for roll INFO 2019-10-08 18:22:47,884Z lrauvNc4ToNetcdf.py createNav():472 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} DEBUG 2019-10-08 18:22:48,027Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for yaw DEBUG 2019-10-08 18:22:48,034Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for yaw INFO 2019-10-08 18:22:48,035Z lrauvNc4ToNetcdf.py createNav():472 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-10-08 18:22:48,036Z lrauvNc4ToNetcdf.py nudge_coords():592 /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737.nc4 DEBUG 2019-10-08 18:22:48,154Z lrauvNc4ToNetcdf.py var_series():580 longitude: rad_to_deg = True DEBUG 2019-10-08 18:22:48,269Z lrauvNc4ToNetcdf.py var_series():580 latitude: rad_to_deg = True DEBUG 2019-10-08 18:22:48,308Z lrauvNc4ToNetcdf.py var_series():580 longitude_fix: rad_to_deg = False DEBUG 2019-10-08 18:22:48,345Z lrauvNc4ToNetcdf.py var_series():580 latitude_fix: rad_to_deg = False INFO 2019-10-08 18:22:48,345Z lrauvNc4ToNetcdf.py nudge_coords():610 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-10-08 18:22:48,347Z lrauvNc4ToNetcdf.py nudge_coords():626 - - - 3 0.01 - - INFO 2019-10-08 18:22:48,349Z lrauvNc4ToNetcdf.py nudge_coords():648 0: 0.343 -0.0002060 0.0001797 571 3.85 -8.51 8.65 INFO 2019-10-08 18:22:48,356Z lrauvNc4ToNetcdf.py nudge_coords():648 1: 0.336 -0.0013609 -0.0007173 5061 34.08 3.84 -3.90 INFO 2019-10-08 18:22:48,362Z lrauvNc4ToNetcdf.py nudge_coords():648 2: 0.367 -0.0000194 0.0002367 641 4.31 -10.01 10.17 INFO 2019-10-08 18:22:48,368Z lrauvNc4ToNetcdf.py nudge_coords():678 4: - - - 165 1.11 - - INFO 2019-10-08 18:22:48,368Z lrauvNc4ToNetcdf.py nudge_coords():682 Points in final series = 6438 DEBUG 2019-10-08 18:22:48,369Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():508 Constructing trackingdb url to 3600 seconds beyond time range of file INFO 2019-10-08 18:22:48,386Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():516 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190826T155434/20190826T183757/data.csv INFO 2019-10-08 18:22:48,412Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():539 Found 0 position values from the Tracking database INFO 2019-10-08 18:22:48,416Z lrauvNc4ToNetcdf.py processResampleNc4File():1095 ['oxygen', 'control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'PAR', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'BackscatteringCoeff700nm', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] DEBUG 2019-10-08 18:22:48,417Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737_2S_scieng.nc DEBUG 2019-10-08 18:22:48,422Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable fix_time DEBUG 2019-10-08 18:22:48,449Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time DEBUG 2019-10-08 18:22:48,459Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable oxygen DEBUG 2019-10-08 18:22:48,468Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_buoyancy_position DEBUG 2019-10-08 18:22:48,477Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable salinity DEBUG 2019-10-08 18:22:48,485Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable temperature DEBUG 2019-10-08 18:22:48,494Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_elevator_angle DEBUG 2019-10-08 18:22:48,502Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_mass_position DEBUG 2019-10-08 18:22:48,511Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_latitude DEBUG 2019-10-08 18:22:48,525Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_longitude DEBUG 2019-10-08 18:22:48,534Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR DEBUG 2019-10-08 18:22:48,543Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_rudder_angle DEBUG 2019-10-08 18:22:48,551Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_propeller_rotation_rate DEBUG 2019-10-08 18:22:48,560Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter DEBUG 2019-10-08 18:22:48,575Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll DEBUG 2019-10-08 18:22:48,584Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable BackscatteringCoeff700nm DEBUG 2019-10-08 18:22:48,593Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm DEBUG 2019-10-08 18:22:48,601Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons DEBUG 2019-10-08 18:22:48,610Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources DEBUG 2019-10-08 18:22:48,618Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_longitude_DeadReckonUsingMultipleVelocitySources DEBUG 2019-10-08 18:22:48,627Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_latitude_DeadReckonUsingMultipleVelocitySources DEBUG 2019-10-08 18:22:48,636Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_depth_DeadReckonUsingMultipleVelocitySources DEBUG 2019-10-08 18:22:48,652Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable health_platform_battery_charge DEBUG 2019-10-08 18:22:48,662Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable health_platform_average_voltage DEBUG 2019-10-08 18:22:48,671Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pitch DEBUG 2019-10-08 18:22:48,680Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable roll DEBUG 2019-10-08 18:22:48,688Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable yaw DEBUG 2019-10-08 18:22:48,697Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude DEBUG 2019-10-08 18:22:48,706Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude DEBUG 2019-10-08 18:22:48,715Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth DEBUG 2019-10-08 18:22:48,724Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata INFO 2019-10-08 18:22:48,927Z lrauvNc4ToNetcdf.py processResampleNc4File():1098 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T165434/201908261654_201908261737_2S_scieng.nc