INFO 2019-10-08 18:37:36,027Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T173757/201908261737_201908261805.nc4 file...
INFO 2019-10-08 18:37:36,027Z lrauvNc4ToNetcdf.py processResampleNc4File():960 After copying to /tmp/201908261737_201908261805.nc4
INFO 2019-10-08 18:37:37,150Z lrauvNc4ToNetcdf.py processResampleNc4File():962 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T173757/201908261737_201908261805.nc4
INFO 2019-10-08 18:37:38,711Z lrauvNc4ToNetcdf.py processResampleNc4File():967 Creating t variable of the time indexes
INFO 2019-10-08 18:37:38,747Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2019-10-08 18:37:38,857Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity
INFO 2019-10-08 18:37:38,966Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature
WARNING 2019-10-08 18:37:38,967Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T173757/201908261737_201908261805.nc4
WARNING 2019-10-08 18:37:38,967Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T173757/201908261737_201908261805.nc4
WARNING 2019-10-08 18:37:38,967Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T173757/201908261737_201908261805.nc4
INFO 2019-10-08 18:37:39,053Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
WARNING 2019-10-08 18:37:39,053Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T173757/201908261737_201908261805.nc4
WARNING 2019-10-08 18:37:39,053Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T173757/201908261737_201908261805.nc4
WARNING 2019-10-08 18:37:39,053Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T173757/201908261737_201908261805.nc4
INFO 2019-10-08 18:37:39,081Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-10-08 18:37:39,108Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-10-08 18:37:39,135Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter BackscatteringCoeff700nm renaming to BackscatteringCoeff700nm
INFO 2019-10-08 18:37:39,162Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-10-08 18:37:39,190Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-10-08 18:37:39,191Z lrauvNc4ToNetcdf.py nudge_coords():592 /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T173757/201908261737_201908261805.nc4
DEBUG 2019-10-08 18:37:39,283Z lrauvNc4ToNetcdf.py var_series():580 longitude: rad_to_deg = True
DEBUG 2019-10-08 18:37:39,367Z lrauvNc4ToNetcdf.py var_series():580 latitude: rad_to_deg = True
DEBUG 2019-10-08 18:37:39,402Z lrauvNc4ToNetcdf.py var_series():580 longitude_fix: rad_to_deg = False
DEBUG 2019-10-08 18:37:39,437Z lrauvNc4ToNetcdf.py var_series():580 latitude_fix: rad_to_deg = False
INFO 2019-10-08 18:37:39,437Z lrauvNc4ToNetcdf.py nudge_coords():610 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-10-08 18:37:39,439Z lrauvNc4ToNetcdf.py nudge_coords():626                  -            -            -        40    0.26              -              -
INFO 2019-10-08 18:37:39,441Z lrauvNc4ToNetcdf.py nudge_coords():648    0:        0.366   -0.0000017    0.0001001       235    1.58         -11.56          11.75
INFO 2019-10-08 18:37:39,447Z lrauvNc4ToNetcdf.py nudge_coords():648    1:        0.371   -0.0000107    0.0000353       110    0.73          -8.77           8.92
INFO 2019-10-08 18:37:39,453Z lrauvNc4ToNetcdf.py nudge_coords():648    2:        0.349   -0.0004436   -0.0001690      2795   18.82           1.64          -1.66
INFO 2019-10-08 18:37:39,459Z lrauvNc4ToNetcdf.py nudge_coords():678    4:            -            -            -       963    6.48              -              -
INFO 2019-10-08 18:37:39,459Z lrauvNc4ToNetcdf.py nudge_coords():682 Points in final series = 4103
DEBUG 2019-10-08 18:37:39,460Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():508 Constructing trackingdb url to 3600 seconds beyond time range of file
INFO 2019-10-08 18:37:39,476Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():516 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190826T163757/20190826T190552/data.csv
INFO 2019-10-08 18:37:39,508Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():539 Found 0 position values from the Tracking database
INFO 2019-10-08 18:37:39,512Z lrauvNc4ToNetcdf.py processResampleNc4File():1095 ['oxygen', 'salinity', 'temperature', 'PAR', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'BackscatteringCoeff700nm', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'latitude', 'longitude', 'depth', 'time']
DEBUG 2019-10-08 18:37:39,513Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T173757/201908261737_201908261805_10S_sci.nc
DEBUG 2019-10-08 18:37:39,518Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time
DEBUG 2019-10-08 18:37:39,534Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable oxygen
DEBUG 2019-10-08 18:37:39,542Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable salinity
DEBUG 2019-10-08 18:37:39,548Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable temperature
DEBUG 2019-10-08 18:37:39,554Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR
DEBUG 2019-10-08 18:37:39,561Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter
DEBUG 2019-10-08 18:37:39,568Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll
DEBUG 2019-10-08 18:37:39,574Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable BackscatteringCoeff700nm
DEBUG 2019-10-08 18:37:39,580Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm
DEBUG 2019-10-08 18:37:39,591Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons
DEBUG 2019-10-08 18:37:39,598Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude
DEBUG 2019-10-08 18:37:39,604Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude
DEBUG 2019-10-08 18:37:39,611Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth
DEBUG 2019-10-08 18:37:39,618Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata
INFO 2019-10-08 18:37:39,786Z lrauvNc4ToNetcdf.py processResampleNc4File():1098 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T173757/201908261737_201908261805_10S_sci.nc