INFO 2019-10-08 18:37:40,113Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4 file... INFO 2019-10-08 18:37:40,114Z lrauvNc4ToNetcdf.py processResampleNc4File():960 After copying to /tmp/201908261806_201908261919.nc4 INFO 2019-10-08 18:37:41,150Z lrauvNc4ToNetcdf.py processResampleNc4File():962 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4 INFO 2019-10-08 18:37:44,585Z lrauvNc4ToNetcdf.py processResampleNc4File():967 Creating t variable of the time indexes INFO 2019-10-08 18:37:44,652Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen INFO 2019-10-08 18:37:44,910Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity INFO 2019-10-08 18:37:45,168Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature WARNING 2019-10-08 18:37:45,168Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4 WARNING 2019-10-08 18:37:45,168Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4 WARNING 2019-10-08 18:37:45,168Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4 INFO 2019-10-08 18:37:45,387Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR WARNING 2019-10-08 18:37:45,387Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4 WARNING 2019-10-08 18:37:45,387Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4 WARNING 2019-10-08 18:37:45,388Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4 INFO 2019-10-08 18:37:45,446Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-10-08 18:37:45,503Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-10-08 18:37:45,561Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter BackscatteringCoeff700nm renaming to BackscatteringCoeff700nm INFO 2019-10-08 18:37:45,618Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-10-08 18:37:45,676Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-10-08 18:37:45,677Z lrauvNc4ToNetcdf.py nudge_coords():592 /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4 DEBUG 2019-10-08 18:37:45,836Z lrauvNc4ToNetcdf.py var_series():580 longitude: rad_to_deg = True DEBUG 2019-10-08 18:37:45,988Z lrauvNc4ToNetcdf.py var_series():580 latitude: rad_to_deg = True DEBUG 2019-10-08 18:37:46,023Z lrauvNc4ToNetcdf.py var_series():580 longitude_fix: rad_to_deg = False DEBUG 2019-10-08 18:37:46,055Z lrauvNc4ToNetcdf.py var_series():580 latitude_fix: rad_to_deg = False INFO 2019-10-08 18:37:46,056Z lrauvNc4ToNetcdf.py nudge_coords():610 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-10-08 18:37:46,057Z lrauvNc4ToNetcdf.py nudge_coords():626 - - - 0 0.00 - - INFO 2019-10-08 18:37:46,060Z lrauvNc4ToNetcdf.py nudge_coords():648 0: 0.373 0.0000823 0.0004082 817 5.52 -13.50 13.71 INFO 2019-10-08 18:37:46,066Z lrauvNc4ToNetcdf.py nudge_coords():648 1: 0.348 0.0000460 0.0001874 347 2.34 -14.58 14.81 INFO 2019-10-08 18:37:46,072Z lrauvNc4ToNetcdf.py nudge_coords():648 2: 0.342 0.0000335 0.0001533 338 2.29 -12.22 12.41 INFO 2019-10-08 18:37:46,078Z lrauvNc4ToNetcdf.py nudge_coords():648 3: 0.368 0.0000583 -0.0000274 1903 12.82 0.39 -0.40 INFO 2019-10-08 18:37:46,084Z lrauvNc4ToNetcdf.py nudge_coords():648 4: 0.288 0.0004715 0.0009323 1267 8.55 -19.89 20.19 INFO 2019-10-08 18:37:46,090Z lrauvNc4ToNetcdf.py nudge_coords():648 5: 0.344 0.0000913 0.0001242 134 0.91 -24.98 25.35 INFO 2019-10-08 18:37:46,096Z lrauvNc4ToNetcdf.py nudge_coords():648 6: 0.340 0.0001127 0.0001572 190 1.28 -22.43 22.77 INFO 2019-10-08 18:37:46,102Z lrauvNc4ToNetcdf.py nudge_coords():648 7: 0.351 0.0007367 0.0001425 4443 29.96 -0.87 0.88 INFO 2019-10-08 18:37:46,108Z lrauvNc4ToNetcdf.py nudge_coords():648 8: 0.353 0.0002080 0.0001085 195 1.31 -15.10 15.32 INFO 2019-10-08 18:37:46,114Z lrauvNc4ToNetcdf.py nudge_coords():678 10: - - - 500 3.36 - - INFO 2019-10-08 18:37:46,115Z lrauvNc4ToNetcdf.py nudge_coords():682 Points in final series = 10134 DEBUG 2019-10-08 18:37:46,115Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():508 Constructing trackingdb url to 3600 seconds beyond time range of file INFO 2019-10-08 18:37:46,131Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():516 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190826T170605/20190826T201930/data.csv INFO 2019-10-08 18:37:46,176Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():539 Found 0 position values from the Tracking database INFO 2019-10-08 18:37:46,180Z lrauvNc4ToNetcdf.py processResampleNc4File():1095 ['oxygen', 'salinity', 'temperature', 'PAR', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'BackscatteringCoeff700nm', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'latitude', 'longitude', 'depth', 'time'] DEBUG 2019-10-08 18:37:46,181Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919_10S_sci.nc DEBUG 2019-10-08 18:37:46,186Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time DEBUG 2019-10-08 18:37:46,204Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable oxygen DEBUG 2019-10-08 18:37:46,213Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable salinity DEBUG 2019-10-08 18:37:46,221Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable temperature DEBUG 2019-10-08 18:37:46,228Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR DEBUG 2019-10-08 18:37:46,236Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter DEBUG 2019-10-08 18:37:46,243Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll DEBUG 2019-10-08 18:37:46,251Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable BackscatteringCoeff700nm DEBUG 2019-10-08 18:37:46,258Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm DEBUG 2019-10-08 18:37:46,270Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons DEBUG 2019-10-08 18:37:46,278Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude DEBUG 2019-10-08 18:37:46,286Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude DEBUG 2019-10-08 18:37:46,294Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth DEBUG 2019-10-08 18:37:46,302Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata INFO 2019-10-08 18:37:46,485Z lrauvNc4ToNetcdf.py processResampleNc4File():1098 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919_10S_sci.nc