INFO 2019-10-08 18:22:54,318Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4 file...
INFO 2019-10-08 18:22:54,319Z lrauvNc4ToNetcdf.py processResampleNc4File():960 After copying to /tmp/201908261806_201908261919.nc4
INFO 2019-10-08 18:22:55,372Z lrauvNc4ToNetcdf.py processResampleNc4File():962 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4
INFO 2019-10-08 18:22:58,843Z lrauvNc4ToNetcdf.py processResampleNc4File():967 Creating t variable of the time indexes
INFO 2019-10-08 18:22:58,911Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2019-10-08 18:22:58,928Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-10-08 18:22:59,191Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity
INFO 2019-10-08 18:22:59,451Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature
WARNING 2019-10-08 18:22:59,451Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4
WARNING 2019-10-08 18:22:59,451Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4
INFO 2019-10-08 18:22:59,473Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-10-08 18:22:59,473Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4
INFO 2019-10-08 18:22:59,484Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-10-08 18:22:59,490Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-10-08 18:22:59,496Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-10-08 18:22:59,501Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2019-10-08 18:22:59,719Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2019-10-08 18:22:59,749Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-10-08 18:22:59,870Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-10-08 18:22:59,870Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4
WARNING 2019-10-08 18:22:59,870Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4
WARNING 2019-10-08 18:22:59,871Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4
INFO 2019-10-08 18:22:59,930Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-10-08 18:22:59,989Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-10-08 18:23:00,053Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter BackscatteringCoeff700nm renaming to BackscatteringCoeff700nm
INFO 2019-10-08 18:23:00,111Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-10-08 18:23:00,170Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-10-08 18:23:00,175Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
INFO 2019-10-08 18:23:00,378Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-10-08 18:23:00,580Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-10-08 18:23:00,783Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-10-08 18:23:00,783Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4
WARNING 2019-10-08 18:23:00,784Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4
WARNING 2019-10-08 18:23:00,784Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4
WARNING 2019-10-08 18:23:00,784Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4
INFO 2019-10-08 18:23:00,793Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-10-08 18:23:00,801Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-10-08 18:23:00,801Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4
DEBUG 2019-10-08 18:23:01,024Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for pitch
DEBUG 2019-10-08 18:23:01,034Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for pitch
INFO 2019-10-08 18:23:01,035Z lrauvNc4ToNetcdf.py createNav():472 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
DEBUG 2019-10-08 18:23:01,257Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for roll
DEBUG 2019-10-08 18:23:01,266Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for roll
INFO 2019-10-08 18:23:01,267Z lrauvNc4ToNetcdf.py createNav():472 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
DEBUG 2019-10-08 18:23:01,489Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for yaw
DEBUG 2019-10-08 18:23:01,498Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for yaw
INFO 2019-10-08 18:23:01,499Z lrauvNc4ToNetcdf.py createNav():472 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-10-08 18:23:01,500Z lrauvNc4ToNetcdf.py nudge_coords():592 /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919.nc4
DEBUG 2019-10-08 18:23:01,656Z lrauvNc4ToNetcdf.py var_series():580 longitude: rad_to_deg = True
DEBUG 2019-10-08 18:23:01,808Z lrauvNc4ToNetcdf.py var_series():580 latitude: rad_to_deg = True
DEBUG 2019-10-08 18:23:01,844Z lrauvNc4ToNetcdf.py var_series():580 longitude_fix: rad_to_deg = False
DEBUG 2019-10-08 18:23:01,876Z lrauvNc4ToNetcdf.py var_series():580 latitude_fix: rad_to_deg = False
INFO 2019-10-08 18:23:01,877Z lrauvNc4ToNetcdf.py nudge_coords():610 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-10-08 18:23:01,878Z lrauvNc4ToNetcdf.py nudge_coords():626                  -            -            -         0    0.00              -              -
INFO 2019-10-08 18:23:01,881Z lrauvNc4ToNetcdf.py nudge_coords():648    0:        0.373    0.0000823    0.0004082       817    5.52         -13.50          13.71
INFO 2019-10-08 18:23:01,887Z lrauvNc4ToNetcdf.py nudge_coords():648    1:        0.348    0.0000460    0.0001874       347    2.34         -14.58          14.81
INFO 2019-10-08 18:23:01,893Z lrauvNc4ToNetcdf.py nudge_coords():648    2:        0.342    0.0000335    0.0001533       338    2.29         -12.22          12.41
INFO 2019-10-08 18:23:01,900Z lrauvNc4ToNetcdf.py nudge_coords():648    3:        0.368    0.0000583   -0.0000274      1903   12.82           0.39          -0.40
INFO 2019-10-08 18:23:01,906Z lrauvNc4ToNetcdf.py nudge_coords():648    4:        0.288    0.0004715    0.0009323      1267    8.55         -19.89          20.19
INFO 2019-10-08 18:23:01,912Z lrauvNc4ToNetcdf.py nudge_coords():648    5:        0.344    0.0000913    0.0001242       134    0.91         -24.98          25.35
INFO 2019-10-08 18:23:01,918Z lrauvNc4ToNetcdf.py nudge_coords():648    6:        0.340    0.0001127    0.0001572       190    1.28         -22.43          22.77
INFO 2019-10-08 18:23:01,924Z lrauvNc4ToNetcdf.py nudge_coords():648    7:        0.351    0.0007367    0.0001425      4443   29.96          -0.87           0.88
INFO 2019-10-08 18:23:01,931Z lrauvNc4ToNetcdf.py nudge_coords():648    8:        0.353    0.0002080    0.0001085       195    1.31         -15.10          15.32
INFO 2019-10-08 18:23:01,937Z lrauvNc4ToNetcdf.py nudge_coords():678   10:            -            -            -       500    3.36              -              -
INFO 2019-10-08 18:23:01,937Z lrauvNc4ToNetcdf.py nudge_coords():682 Points in final series = 10134
DEBUG 2019-10-08 18:23:01,938Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():508 Constructing trackingdb url to 3600 seconds beyond time range of file
INFO 2019-10-08 18:23:01,955Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():516 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190826T170605/20190826T201930/data.csv
INFO 2019-10-08 18:23:01,983Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():539 Found 0 position values from the Tracking database
INFO 2019-10-08 18:23:01,988Z lrauvNc4ToNetcdf.py processResampleNc4File():1095 ['oxygen', 'control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'PAR', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'BackscatteringCoeff700nm', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
DEBUG 2019-10-08 18:23:01,989Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919_2S_scieng.nc
DEBUG 2019-10-08 18:23:01,993Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable fix_time
DEBUG 2019-10-08 18:23:02,009Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time
DEBUG 2019-10-08 18:23:02,021Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable oxygen
DEBUG 2019-10-08 18:23:02,033Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_buoyancy_position
DEBUG 2019-10-08 18:23:02,044Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable salinity
DEBUG 2019-10-08 18:23:02,055Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable temperature
DEBUG 2019-10-08 18:23:02,067Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_elevator_angle
DEBUG 2019-10-08 18:23:02,078Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_mass_position
DEBUG 2019-10-08 18:23:02,089Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_latitude
DEBUG 2019-10-08 18:23:02,107Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_longitude
DEBUG 2019-10-08 18:23:02,118Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR
DEBUG 2019-10-08 18:23:02,130Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_rudder_angle
DEBUG 2019-10-08 18:23:02,141Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_propeller_rotation_rate
DEBUG 2019-10-08 18:23:02,153Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter
DEBUG 2019-10-08 18:23:02,171Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll
DEBUG 2019-10-08 18:23:02,183Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable BackscatteringCoeff700nm
DEBUG 2019-10-08 18:23:02,195Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm
DEBUG 2019-10-08 18:23:02,206Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons
DEBUG 2019-10-08 18:23:02,218Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_residual_percent_distance_traveled_DeadReckonUsingMultipleVelocitySources
DEBUG 2019-10-08 18:23:02,229Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_longitude_DeadReckonUsingMultipleVelocitySources
DEBUG 2019-10-08 18:23:02,241Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_latitude_DeadReckonUsingMultipleVelocitySources
DEBUG 2019-10-08 18:23:02,252Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_depth_DeadReckonUsingMultipleVelocitySources
DEBUG 2019-10-08 18:23:02,271Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable health_platform_battery_charge
DEBUG 2019-10-08 18:23:02,283Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable health_platform_average_voltage
DEBUG 2019-10-08 18:23:02,295Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pitch
DEBUG 2019-10-08 18:23:02,306Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable roll
DEBUG 2019-10-08 18:23:02,318Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable yaw
DEBUG 2019-10-08 18:23:02,329Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude
DEBUG 2019-10-08 18:23:02,341Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude
DEBUG 2019-10-08 18:23:02,353Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth
DEBUG 2019-10-08 18:23:02,364Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata
INFO 2019-10-08 18:23:02,595Z lrauvNc4ToNetcdf.py processResampleNc4File():1098 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T180554/201908261806_201908261919_2S_scieng.nc