INFO 2019-10-08 18:37:46,671Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 file...
INFO 2019-10-08 18:37:46,672Z lrauvNc4ToNetcdf.py processResampleNc4File():960 After copying to /tmp/201908261919_201908261959.nc4
INFO 2019-10-08 18:37:47,956Z lrauvNc4ToNetcdf.py processResampleNc4File():962 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4
INFO 2019-10-08 18:37:50,017Z lrauvNc4ToNetcdf.py processResampleNc4File():967 Creating t variable of the time indexes
INFO 2019-10-08 18:37:50,065Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2019-10-08 18:37:50,242Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity
INFO 2019-10-08 18:37:50,418Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature
WARNING 2019-10-08 18:37:50,418Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4
WARNING 2019-10-08 18:37:50,418Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4
WARNING 2019-10-08 18:37:50,418Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4
INFO 2019-10-08 18:37:50,538Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
WARNING 2019-10-08 18:37:50,538Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4
WARNING 2019-10-08 18:37:50,539Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4
WARNING 2019-10-08 18:37:50,539Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4
INFO 2019-10-08 18:37:50,580Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-10-08 18:37:50,620Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-10-08 18:37:50,660Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter BackscatteringCoeff700nm renaming to BackscatteringCoeff700nm
INFO 2019-10-08 18:37:50,701Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-10-08 18:37:50,741Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-10-08 18:37:50,743Z lrauvNc4ToNetcdf.py nudge_coords():592 /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4
DEBUG 2019-10-08 18:37:50,847Z lrauvNc4ToNetcdf.py var_series():580 longitude: rad_to_deg = True
DEBUG 2019-10-08 18:37:50,948Z lrauvNc4ToNetcdf.py var_series():580 latitude: rad_to_deg = True
DEBUG 2019-10-08 18:37:50,982Z lrauvNc4ToNetcdf.py var_series():580 longitude_fix: rad_to_deg = False
DEBUG 2019-10-08 18:37:51,013Z lrauvNc4ToNetcdf.py var_series():580 latitude_fix: rad_to_deg = False
INFO 2019-10-08 18:37:51,014Z lrauvNc4ToNetcdf.py nudge_coords():610 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-10-08 18:37:51,016Z lrauvNc4ToNetcdf.py nudge_coords():626                  -            -            -       335    2.25              -              -
INFO 2019-10-08 18:37:51,018Z lrauvNc4ToNetcdf.py nudge_coords():648    0:        0.277    0.0003153    0.0002027       300    2.02         -18.33          18.59
INFO 2019-10-08 18:37:51,024Z lrauvNc4ToNetcdf.py nudge_coords():678    2:            -            -            -      5261   35.45              -              -
INFO 2019-10-08 18:37:51,024Z lrauvNc4ToNetcdf.py nudge_coords():682 Points in final series = 5896
DEBUG 2019-10-08 18:37:51,025Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():508 Constructing trackingdb url to 3600 seconds beyond time range of file
INFO 2019-10-08 18:37:51,039Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():516 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190826T181931/20190826T205914/data.csv
INFO 2019-10-08 18:37:51,069Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():539 Found 0 position values from the Tracking database
INFO 2019-10-08 18:37:51,073Z lrauvNc4ToNetcdf.py processResampleNc4File():1095 ['oxygen', 'salinity', 'temperature', 'PAR', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'BackscatteringCoeff700nm', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'latitude', 'longitude', 'depth', 'time']
DEBUG 2019-10-08 18:37:51,074Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959_10S_sci.nc
DEBUG 2019-10-08 18:37:51,078Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time
DEBUG 2019-10-08 18:37:51,090Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable oxygen
DEBUG 2019-10-08 18:37:51,098Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable salinity
DEBUG 2019-10-08 18:37:51,106Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable temperature
DEBUG 2019-10-08 18:37:51,113Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR
DEBUG 2019-10-08 18:37:51,121Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter
DEBUG 2019-10-08 18:37:51,128Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll
DEBUG 2019-10-08 18:37:51,136Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable BackscatteringCoeff700nm
DEBUG 2019-10-08 18:37:51,143Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm
DEBUG 2019-10-08 18:37:51,155Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons
DEBUG 2019-10-08 18:37:51,163Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude
DEBUG 2019-10-08 18:37:51,171Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude
DEBUG 2019-10-08 18:37:51,179Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth
DEBUG 2019-10-08 18:37:51,186Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata
INFO 2019-10-08 18:37:51,366Z lrauvNc4ToNetcdf.py processResampleNc4File():1098 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959_10S_sci.nc