INFO 2019-10-08 18:23:02,857Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 file... INFO 2019-10-08 18:23:02,858Z lrauvNc4ToNetcdf.py processResampleNc4File():960 After copying to /tmp/201908261919_201908261959.nc4 INFO 2019-10-08 18:23:04,156Z lrauvNc4ToNetcdf.py processResampleNc4File():962 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 INFO 2019-10-08 18:23:06,218Z lrauvNc4ToNetcdf.py processResampleNc4File():967 Creating t variable of the time indexes INFO 2019-10-08 18:23:06,266Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen INFO 2019-10-08 18:23:06,276Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2019-10-08 18:23:06,452Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity INFO 2019-10-08 18:23:06,627Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature WARNING 2019-10-08 18:23:06,627Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 WARNING 2019-10-08 18:23:06,628Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 INFO 2019-10-08 18:23:06,644Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle WARNING 2019-10-08 18:23:06,644Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 INFO 2019-10-08 18:23:06,650Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2019-10-08 18:23:06,656Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2019-10-08 18:23:06,661Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2019-10-08 18:23:06,667Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2019-10-08 18:23:06,787Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2019-10-08 18:23:06,809Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2019-10-08 18:23:06,893Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate WARNING 2019-10-08 18:23:06,893Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 WARNING 2019-10-08 18:23:06,893Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 WARNING 2019-10-08 18:23:06,894Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 INFO 2019-10-08 18:23:06,935Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-10-08 18:23:06,976Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-10-08 18:23:07,016Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter BackscatteringCoeff700nm renaming to BackscatteringCoeff700nm INFO 2019-10-08 18:23:07,057Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-10-08 18:23:07,098Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-10-08 18:23:07,100Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Variable fix_residual_percent_distance_traveled empty so skipping INFO 2019-10-08 18:23:07,219Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2019-10-08 18:23:07,340Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2019-10-08 18:23:07,459Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources WARNING 2019-10-08 18:23:07,459Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 WARNING 2019-10-08 18:23:07,459Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 WARNING 2019-10-08 18:23:07,460Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 WARNING 2019-10-08 18:23:07,460Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 INFO 2019-10-08 18:23:07,468Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2019-10-08 18:23:07,476Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage WARNING 2019-10-08 18:23:07,476Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 DEBUG 2019-10-08 18:23:07,608Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for pitch DEBUG 2019-10-08 18:23:07,615Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for pitch INFO 2019-10-08 18:23:07,616Z lrauvNc4ToNetcdf.py createNav():472 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} DEBUG 2019-10-08 18:23:07,745Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for roll DEBUG 2019-10-08 18:23:07,752Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for roll INFO 2019-10-08 18:23:07,753Z lrauvNc4ToNetcdf.py createNav():472 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} DEBUG 2019-10-08 18:23:07,882Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for yaw DEBUG 2019-10-08 18:23:07,889Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for yaw INFO 2019-10-08 18:23:07,890Z lrauvNc4ToNetcdf.py createNav():472 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-10-08 18:23:07,891Z lrauvNc4ToNetcdf.py nudge_coords():592 /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959.nc4 DEBUG 2019-10-08 18:23:07,994Z lrauvNc4ToNetcdf.py var_series():580 longitude: rad_to_deg = True DEBUG 2019-10-08 18:23:08,095Z lrauvNc4ToNetcdf.py var_series():580 latitude: rad_to_deg = True DEBUG 2019-10-08 18:23:08,126Z lrauvNc4ToNetcdf.py var_series():580 longitude_fix: rad_to_deg = False DEBUG 2019-10-08 18:23:08,157Z lrauvNc4ToNetcdf.py var_series():580 latitude_fix: rad_to_deg = False INFO 2019-10-08 18:23:08,157Z lrauvNc4ToNetcdf.py nudge_coords():610 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-10-08 18:23:08,160Z lrauvNc4ToNetcdf.py nudge_coords():626 - - - 335 2.25 - - INFO 2019-10-08 18:23:08,162Z lrauvNc4ToNetcdf.py nudge_coords():648 0: 0.277 0.0003153 0.0002027 300 2.02 -18.33 18.59 INFO 2019-10-08 18:23:08,168Z lrauvNc4ToNetcdf.py nudge_coords():678 2: - - - 5261 35.45 - - INFO 2019-10-08 18:23:08,169Z lrauvNc4ToNetcdf.py nudge_coords():682 Points in final series = 5896 DEBUG 2019-10-08 18:23:08,169Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():508 Constructing trackingdb url to 3600 seconds beyond time range of file INFO 2019-10-08 18:23:08,183Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():516 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190826T181931/20190826T205914/data.csv INFO 2019-10-08 18:23:08,233Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():539 Found 0 position values from the Tracking database INFO 2019-10-08 18:23:08,237Z lrauvNc4ToNetcdf.py processResampleNc4File():1095 ['oxygen', 'control_inputs_buoyancy_position', 'salinity', 'temperature', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'PAR', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'BackscatteringCoeff700nm', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] DEBUG 2019-10-08 18:23:08,238Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959_2S_scieng.nc DEBUG 2019-10-08 18:23:08,242Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable fix_time DEBUG 2019-10-08 18:23:08,258Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time DEBUG 2019-10-08 18:23:08,269Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable oxygen DEBUG 2019-10-08 18:23:08,281Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_buoyancy_position DEBUG 2019-10-08 18:23:08,292Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable salinity DEBUG 2019-10-08 18:23:08,303Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable temperature DEBUG 2019-10-08 18:23:08,314Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_elevator_angle DEBUG 2019-10-08 18:23:08,325Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_mass_position DEBUG 2019-10-08 18:23:08,336Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_latitude DEBUG 2019-10-08 18:23:08,353Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_longitude DEBUG 2019-10-08 18:23:08,364Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR DEBUG 2019-10-08 18:23:08,375Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_rudder_angle DEBUG 2019-10-08 18:23:08,387Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_propeller_rotation_rate DEBUG 2019-10-08 18:23:08,398Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter DEBUG 2019-10-08 18:23:08,416Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll DEBUG 2019-10-08 18:23:08,427Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable BackscatteringCoeff700nm DEBUG 2019-10-08 18:23:08,439Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm DEBUG 2019-10-08 18:23:08,450Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons DEBUG 2019-10-08 18:23:08,461Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_longitude_DeadReckonUsingMultipleVelocitySources DEBUG 2019-10-08 18:23:08,472Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_latitude_DeadReckonUsingMultipleVelocitySources DEBUG 2019-10-08 18:23:08,484Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_depth_DeadReckonUsingMultipleVelocitySources DEBUG 2019-10-08 18:23:08,495Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable health_platform_battery_charge DEBUG 2019-10-08 18:23:08,506Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable health_platform_average_voltage DEBUG 2019-10-08 18:23:08,517Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pitch DEBUG 2019-10-08 18:23:08,528Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable roll DEBUG 2019-10-08 18:23:08,539Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable yaw DEBUG 2019-10-08 18:23:08,550Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude DEBUG 2019-10-08 18:23:08,562Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude DEBUG 2019-10-08 18:23:08,573Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth DEBUG 2019-10-08 18:23:08,584Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata INFO 2019-10-08 18:23:08,818Z lrauvNc4ToNetcdf.py processResampleNc4File():1098 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T191930/201908261919_201908261959_2S_scieng.nc