INFO 2019-10-08 18:37:52,016Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T195916/201908261959_201908262353.nc4 file... INFO 2019-10-08 18:37:52,017Z lrauvNc4ToNetcdf.py processResampleNc4File():960 After copying to /tmp/201908261959_201908262353.nc4 INFO 2019-10-08 18:37:53,143Z lrauvNc4ToNetcdf.py processResampleNc4File():962 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T195916/201908261959_201908262353.nc4 INFO 2019-10-08 18:38:03,757Z lrauvNc4ToNetcdf.py processResampleNc4File():967 Creating t variable of the time indexes INFO 2019-10-08 18:38:03,980Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen INFO 2019-10-08 18:38:04,954Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_salinity renaming to salinity INFO 2019-10-08 18:38:05,921Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group CTD_NeilBrown parameter sea_water_temperature renaming to temperature WARNING 2019-10-08 18:38:05,921Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T195916/201908261959_201908262353.nc4 WARNING 2019-10-08 18:38:05,921Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T195916/201908261959_201908262353.nc4 WARNING 2019-10-08 18:38:05,921Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T195916/201908261959_201908262353.nc4 INFO 2019-10-08 18:38:06,592Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR WARNING 2019-10-08 18:38:06,592Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T195916/201908261959_201908262353.nc4 WARNING 2019-10-08 18:38:06,593Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T195916/201908261959_201908262353.nc4 WARNING 2019-10-08 18:38:06,593Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T195916/201908261959_201908262353.nc4 INFO 2019-10-08 18:38:06,797Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-10-08 18:38:06,997Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-10-08 18:38:07,197Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter BackscatteringCoeff700nm renaming to BackscatteringCoeff700nm INFO 2019-10-08 18:38:07,398Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-10-08 18:38:07,601Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-10-08 18:38:07,603Z lrauvNc4ToNetcdf.py nudge_coords():592 /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T195916/201908261959_201908262353.nc4 DEBUG 2019-10-08 18:38:08,070Z lrauvNc4ToNetcdf.py var_series():580 longitude: rad_to_deg = True DEBUG 2019-10-08 18:38:08,512Z lrauvNc4ToNetcdf.py var_series():580 latitude: rad_to_deg = True DEBUG 2019-10-08 18:38:08,553Z lrauvNc4ToNetcdf.py var_series():580 longitude_fix: rad_to_deg = False DEBUG 2019-10-08 18:38:08,589Z lrauvNc4ToNetcdf.py var_series():580 latitude_fix: rad_to_deg = False INFO 2019-10-08 18:38:08,589Z lrauvNc4ToNetcdf.py nudge_coords():610 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-10-08 18:38:08,591Z lrauvNc4ToNetcdf.py nudge_coords():626 - - - 0 0.00 - - INFO 2019-10-08 18:38:08,596Z lrauvNc4ToNetcdf.py nudge_coords():648 0: 0.387 0.0011572 0.0003212 800 5.44 -10.80 10.95 INFO 2019-10-08 18:38:08,603Z lrauvNc4ToNetcdf.py nudge_coords():648 1: 0.330 0.0006587 0.0001992 439 2.97 -12.25 12.41 INFO 2019-10-08 18:38:08,609Z lrauvNc4ToNetcdf.py nudge_coords():648 2: 0.361 0.0001038 0.0000338 56 0.44 -14.13 14.32 INFO 2019-10-08 18:38:08,615Z lrauvNc4ToNetcdf.py nudge_coords():648 3: 0.347 0.0000523 0.0000110 39 0.26 -7.85 7.95 INFO 2019-10-08 18:38:08,621Z lrauvNc4ToNetcdf.py nudge_coords():648 4: 0.362 0.0011960 0.0003455 783 5.29 -11.94 12.10 INFO 2019-10-08 18:38:08,627Z lrauvNc4ToNetcdf.py nudge_coords():648 5: 0.360 0.0003156 0.0000617 192 1.29 -8.77 8.89 INFO 2019-10-08 18:38:08,633Z lrauvNc4ToNetcdf.py nudge_coords():648 6: 0.333 0.0006013 0.0001497 376 2.54 -10.77 10.92 INFO 2019-10-08 18:38:08,639Z lrauvNc4ToNetcdf.py nudge_coords():648 7: 0.359 0.0010022 -0.0001928 3165 21.31 1.65 -1.68 INFO 2019-10-08 18:38:08,645Z lrauvNc4ToNetcdf.py nudge_coords():648 8: 0.345 0.0005342 -0.0000353 527 3.59 1.80 -1.82 INFO 2019-10-08 18:38:08,652Z lrauvNc4ToNetcdf.py nudge_coords():648 9: 0.340 0.0005200 -0.0005880 3125 21.05 5.11 -5.18 INFO 2019-10-08 18:38:08,658Z lrauvNc4ToNetcdf.py nudge_coords():648 10: 0.380 0.0003000 -0.0002837 507 3.44 15.07 -15.27 INFO 2019-10-08 18:38:08,664Z lrauvNc4ToNetcdf.py nudge_coords():648 11: 0.337 0.0009389 -0.0001999 3475 23.40 1.56 -1.58 INFO 2019-10-08 18:38:08,671Z lrauvNc4ToNetcdf.py nudge_coords():648 12: 0.374 0.0000820 0.0000187 77 0.54 -6.37 6.46 INFO 2019-10-08 18:38:08,677Z lrauvNc4ToNetcdf.py nudge_coords():648 13: 0.341 0.0001797 -0.0005187 3327 22.43 4.23 -4.29 INFO 2019-10-08 18:38:08,683Z lrauvNc4ToNetcdf.py nudge_coords():648 14: 0.316 0.0003037 -0.0000260 361 3.13 1.52 -1.54 INFO 2019-10-08 18:38:08,689Z lrauvNc4ToNetcdf.py nudge_coords():648 15: 0.362 0.0004247 -0.0003709 3822 25.76 2.64 -2.67 INFO 2019-10-08 18:38:08,696Z lrauvNc4ToNetcdf.py nudge_coords():648 16: 0.340 0.0004208 -0.0000326 551 3.72 1.60 -1.62 INFO 2019-10-08 18:38:08,702Z lrauvNc4ToNetcdf.py nudge_coords():648 17: 0.342 0.0000535 -0.0000033 33 0.39 1.56 -1.58 INFO 2019-10-08 18:38:08,708Z lrauvNc4ToNetcdf.py nudge_coords():648 18: 0.337 0.0003526 -0.0005338 3182 21.43 4.56 -4.61 INFO 2019-10-08 18:38:08,714Z lrauvNc4ToNetcdf.py nudge_coords():648 19: 0.378 0.0002842 -0.0000898 496 3.38 4.87 -4.93 INFO 2019-10-08 18:38:08,721Z lrauvNc4ToNetcdf.py nudge_coords():648 20: 0.308 0.0497157 0.0034597 3656 24.64 -25.72 26.01 INFO 2019-10-08 18:38:08,727Z lrauvNc4ToNetcdf.py nudge_coords():648 21: 0.328 0.0007615 -0.0000195 437 3.12 1.14 -1.16 INFO 2019-10-08 18:38:08,733Z lrauvNc4ToNetcdf.py nudge_coords():648 22: 0.340 -0.0000118 0.0002845 99 0.66 -78.93 79.82 INFO 2019-10-08 18:38:08,739Z lrauvNc4ToNetcdf.py nudge_coords():648 23: 0.358 -0.0000013 0.0000332 6 0.03 -180.85 182.89 INFO 2019-10-08 18:38:08,745Z lrauvNc4ToNetcdf.py nudge_coords():648 24: 0.381 0.0002520 0.0000320 186 1.25 -4.71 4.76 INFO 2019-10-08 18:38:08,751Z lrauvNc4ToNetcdf.py nudge_coords():648 25: 0.373 0.0000815 0.0000180 54 0.36 -9.25 9.35 INFO 2019-10-08 18:38:08,757Z lrauvNc4ToNetcdf.py nudge_coords():648 26: 0.284 0.0000092 -0.0000062 8 0.05 23.25 -23.51 INFO 2019-10-08 18:38:08,764Z lrauvNc4ToNetcdf.py nudge_coords():648 27: 0.357 0.0000143 -0.0000035 7 0.04 16.08 -16.26 INFO 2019-10-08 18:38:08,772Z lrauvNc4ToNetcdf.py nudge_coords():648 28: 0.347 0.0000152 -0.0000230 7 0.04 104.27 -105.45 INFO 2019-10-08 18:38:08,778Z lrauvNc4ToNetcdf.py nudge_coords():648 29: 0.362 0.0000077 -0.0000038 8 0.05 14.88 -15.05 INFO 2019-10-08 18:38:08,784Z lrauvNc4ToNetcdf.py nudge_coords():648 30: 0.332 0.0000062 0.0000125 7 0.04 -55.61 56.24 INFO 2019-10-08 18:38:08,790Z lrauvNc4ToNetcdf.py nudge_coords():648 31: 0.361 0.0000030 -0.0000005 8 0.05 2.03 -2.05 INFO 2019-10-08 18:38:08,796Z lrauvNc4ToNetcdf.py nudge_coords():648 32: 0.352 0.0000080 0.0000018 7 0.04 -8.28 8.38 INFO 2019-10-08 18:38:08,802Z lrauvNc4ToNetcdf.py nudge_coords():648 33: 0.361 0.0000838 0.0001670 94 0.63 -48.85 49.40 INFO 2019-10-08 18:38:08,808Z lrauvNc4ToNetcdf.py nudge_coords():678 35: - - - 3515 24.81 - - INFO 2019-10-08 18:38:08,808Z lrauvNc4ToNetcdf.py nudge_coords():682 Points in final series = 33432 DEBUG 2019-10-08 18:38:08,809Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():508 Constructing trackingdb url to 3600 seconds beyond time range of file INFO 2019-10-08 18:38:08,830Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():516 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190826T185927/20190827T005345/data.csv INFO 2019-10-08 18:38:08,880Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():539 Found 0 position values from the Tracking database INFO 2019-10-08 18:38:08,885Z lrauvNc4ToNetcdf.py processResampleNc4File():1095 ['oxygen', 'salinity', 'temperature', 'PAR', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'BackscatteringCoeff700nm', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'latitude', 'longitude', 'depth', 'time'] DEBUG 2019-10-08 18:38:08,886Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T195916/201908261959_201908262353_10S_sci.nc DEBUG 2019-10-08 18:38:08,891Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time DEBUG 2019-10-08 18:38:08,917Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable oxygen DEBUG 2019-10-08 18:38:08,927Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable salinity DEBUG 2019-10-08 18:38:08,936Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable temperature DEBUG 2019-10-08 18:38:08,945Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR DEBUG 2019-10-08 18:38:08,954Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter DEBUG 2019-10-08 18:38:08,963Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll DEBUG 2019-10-08 18:38:08,972Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable BackscatteringCoeff700nm DEBUG 2019-10-08 18:38:08,981Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm DEBUG 2019-10-08 18:38:08,995Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons DEBUG 2019-10-08 18:38:09,004Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude DEBUG 2019-10-08 18:38:09,013Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude DEBUG 2019-10-08 18:38:09,022Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth DEBUG 2019-10-08 18:38:09,031Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata INFO 2019-10-08 18:38:09,233Z lrauvNc4ToNetcdf.py processResampleNc4File():1098 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190826T195916/201908261959_201908262353_10S_sci.nc