INFO 2019-10-08 18:25:41,458Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029.nc4 file...
INFO 2019-10-08 18:25:41,459Z lrauvNc4ToNetcdf.py processResampleNc4File():960 After copying to /tmp/201908280016_201908280029.nc4
INFO 2019-10-08 18:25:42,303Z lrauvNc4ToNetcdf.py processResampleNc4File():962 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029.nc4
INFO 2019-10-08 18:25:42,983Z lrauvNc4ToNetcdf.py processResampleNc4File():967 Creating t variable of the time indexes
INFO 2019-10-08 18:25:42,992Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2019-10-08 18:25:42,997Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2019-10-08 18:25:42,999Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Variable sea_water_salinity empty so skipping
INFO 2019-10-08 18:25:43,001Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Variable sea_water_temperature empty so skipping
WARNING 2019-10-08 18:25:43,002Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029.nc4
WARNING 2019-10-08 18:25:43,002Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029.nc4
INFO 2019-10-08 18:25:43,008Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
WARNING 2019-10-08 18:25:43,008Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029.nc4
INFO 2019-10-08 18:25:43,016Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2019-10-08 18:25:43,022Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2019-10-08 18:25:43,027Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2019-10-08 18:25:43,032Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2019-10-08 18:25:43,075Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2019-10-08 18:25:43,082Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2019-10-08 18:25:43,087Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
WARNING 2019-10-08 18:25:43,087Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029.nc4
WARNING 2019-10-08 18:25:43,087Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029.nc4
WARNING 2019-10-08 18:25:43,088Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029.nc4
INFO 2019-10-08 18:25:43,093Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-10-08 18:25:43,098Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-10-08 18:25:43,100Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-10-08 18:25:43,105Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-10-08 18:25:43,110Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-10-08 18:25:43,112Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2019-10-08 18:25:43,134Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-10-08 18:25:43,158Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources
INFO 2019-10-08 18:25:43,181Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources
WARNING 2019-10-08 18:25:43,182Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029.nc4
WARNING 2019-10-08 18:25:43,182Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029.nc4
WARNING 2019-10-08 18:25:43,182Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029.nc4
WARNING 2019-10-08 18:25:43,182Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029.nc4
INFO 2019-10-08 18:25:43,191Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2019-10-08 18:25:43,198Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
WARNING 2019-10-08 18:25:43,198Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029.nc4
DEBUG 2019-10-08 18:25:43,254Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for pitch
DEBUG 2019-10-08 18:25:43,258Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for pitch
INFO 2019-10-08 18:25:43,259Z lrauvNc4ToNetcdf.py createNav():472 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
DEBUG 2019-10-08 18:25:43,313Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for roll
DEBUG 2019-10-08 18:25:43,317Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for roll
INFO 2019-10-08 18:25:43,318Z lrauvNc4ToNetcdf.py createNav():472 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
DEBUG 2019-10-08 18:25:43,371Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for yaw
DEBUG 2019-10-08 18:25:43,375Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for yaw
INFO 2019-10-08 18:25:43,376Z lrauvNc4ToNetcdf.py createNav():472 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2019-10-08 18:25:43,377Z lrauvNc4ToNetcdf.py nudge_coords():592 /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029.nc4
DEBUG 2019-10-08 18:25:43,414Z lrauvNc4ToNetcdf.py var_series():580 longitude: rad_to_deg = True
DEBUG 2019-10-08 18:25:43,451Z lrauvNc4ToNetcdf.py var_series():580 latitude: rad_to_deg = True
DEBUG 2019-10-08 18:25:43,478Z lrauvNc4ToNetcdf.py var_series():580 longitude_fix: rad_to_deg = False
DEBUG 2019-10-08 18:25:43,503Z lrauvNc4ToNetcdf.py var_series():580 latitude_fix: rad_to_deg = False
INFO 2019-10-08 18:25:43,503Z lrauvNc4ToNetcdf.py nudge_coords():610 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-10-08 18:25:43,505Z lrauvNc4ToNetcdf.py nudge_coords():626                  -            -            -         0    0.00              -              -
INFO 2019-10-08 18:25:43,507Z lrauvNc4ToNetcdf.py nudge_coords():678    1:            -            -            -       899    6.05              -              -
INFO 2019-10-08 18:25:43,507Z lrauvNc4ToNetcdf.py nudge_coords():682 Points in final series = 899
DEBUG 2019-10-08 18:25:43,508Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():508 Constructing trackingdb url to 3600 seconds beyond time range of file
INFO 2019-10-08 18:25:43,518Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():516 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190827T231600/20190828T012910/data.csv
INFO 2019-10-08 18:25:43,548Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():539 Found 0 position values from the Tracking database
INFO 2019-10-08 18:25:43,552Z lrauvNc4ToNetcdf.py processResampleNc4File():1095 ['oxygen', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'PAR', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'health_platform_battery_charge', 'health_platform_average_voltage', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
DEBUG 2019-10-08 18:25:43,553Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029_2S_scieng.nc
DEBUG 2019-10-08 18:25:43,557Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable fix_time
DEBUG 2019-10-08 18:25:43,577Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time
DEBUG 2019-10-08 18:25:43,592Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable oxygen
DEBUG 2019-10-08 18:25:43,607Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_buoyancy_position
DEBUG 2019-10-08 18:25:43,622Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_elevator_angle
DEBUG 2019-10-08 18:25:43,637Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_mass_position
DEBUG 2019-10-08 18:25:43,653Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_latitude
DEBUG 2019-10-08 18:25:43,668Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_longitude
DEBUG 2019-10-08 18:25:43,684Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR
DEBUG 2019-10-08 18:25:43,703Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_rudder_angle
DEBUG 2019-10-08 18:25:43,718Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_propeller_rotation_rate
DEBUG 2019-10-08 18:25:43,734Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter
DEBUG 2019-10-08 18:25:43,749Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll
DEBUG 2019-10-08 18:25:43,768Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm
DEBUG 2019-10-08 18:25:43,784Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons
DEBUG 2019-10-08 18:25:43,799Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_longitude_DeadReckonUsingMultipleVelocitySources
DEBUG 2019-10-08 18:25:43,814Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_latitude_DeadReckonUsingMultipleVelocitySources
DEBUG 2019-10-08 18:25:43,830Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_depth_DeadReckonUsingMultipleVelocitySources
DEBUG 2019-10-08 18:25:43,845Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable health_platform_battery_charge
DEBUG 2019-10-08 18:25:43,860Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable health_platform_average_voltage
DEBUG 2019-10-08 18:25:43,875Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pitch
DEBUG 2019-10-08 18:25:43,891Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable roll
DEBUG 2019-10-08 18:25:43,906Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable yaw
DEBUG 2019-10-08 18:25:43,921Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude
DEBUG 2019-10-08 18:25:43,937Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude
DEBUG 2019-10-08 18:25:43,952Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth
DEBUG 2019-10-08 18:25:43,967Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata
INFO 2019-10-08 18:25:44,234Z lrauvNc4ToNetcdf.py processResampleNc4File():1098 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190828T001549/201908280016_201908280029_2S_scieng.nc