INFO 2019-10-08 18:43:08,760Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 file...
INFO 2019-10-08 18:43:08,761Z lrauvNc4ToNetcdf.py processResampleNc4File():960 After copying to /tmp/201908292209_201908292214.nc4
INFO 2019-10-08 18:43:10,001Z lrauvNc4ToNetcdf.py processResampleNc4File():962 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4
INFO 2019-10-08 18:43:10,471Z lrauvNc4ToNetcdf.py processResampleNc4File():967 Creating t variable of the time indexes
INFO 2019-10-08 18:43:10,480Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2019-10-08 18:43:10,482Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Variable sea_water_salinity empty so skipping
INFO 2019-10-08 18:43:10,485Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Variable sea_water_temperature empty so skipping
WARNING 2019-10-08 18:43:10,485Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4
WARNING 2019-10-08 18:43:10,485Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4
WARNING 2019-10-08 18:43:10,485Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4
INFO 2019-10-08 18:43:10,504Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
WARNING 2019-10-08 18:43:10,504Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4
WARNING 2019-10-08 18:43:10,504Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4
WARNING 2019-10-08 18:43:10,505Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4
INFO 2019-10-08 18:43:10,510Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter
INFO 2019-10-08 18:43:10,515Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2019-10-08 18:43:10,517Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Variable BackscatteringCoeff700nm empty so skipping
INFO 2019-10-08 18:43:10,522Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm
INFO 2019-10-08 18:43:10,527Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons
INFO 2019-10-08 18:43:10,528Z lrauvNc4ToNetcdf.py nudge_coords():592 /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4
DEBUG 2019-10-08 18:43:10,569Z lrauvNc4ToNetcdf.py var_series():580 longitude: rad_to_deg = True
DEBUG 2019-10-08 18:43:10,608Z lrauvNc4ToNetcdf.py var_series():580 latitude: rad_to_deg = True
DEBUG 2019-10-08 18:43:10,642Z lrauvNc4ToNetcdf.py var_series():580 longitude_fix: rad_to_deg = False
DEBUG 2019-10-08 18:43:10,676Z lrauvNc4ToNetcdf.py var_series():580 latitude_fix: rad_to_deg = False
INFO 2019-10-08 18:43:10,676Z lrauvNc4ToNetcdf.py nudge_coords():610 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s)
INFO 2019-10-08 18:43:10,677Z lrauvNc4ToNetcdf.py nudge_coords():626                  -            -            -         0    0.00              -              -
INFO 2019-10-08 18:43:10,679Z lrauvNc4ToNetcdf.py nudge_coords():648    0:        0.371    0.0001297    0.0000165       147    1.26          -2.39           2.42
INFO 2019-10-08 18:43:10,685Z lrauvNc4ToNetcdf.py nudge_coords():678    2:            -            -            -       223    1.70              -              -
INFO 2019-10-08 18:43:10,685Z lrauvNc4ToNetcdf.py nudge_coords():682 Points in final series = 370
DEBUG 2019-10-08 18:43:10,686Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():508 Constructing trackingdb url to 3600 seconds beyond time range of file
INFO 2019-10-08 18:43:10,700Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():516 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190829T210940/20190829T231441/data.csv
INFO 2019-10-08 18:43:10,717Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():539 Found 0 position values from the Tracking database
INFO 2019-10-08 18:43:10,721Z lrauvNc4ToNetcdf.py processResampleNc4File():1095 ['oxygen', 'PAR', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'latitude', 'longitude', 'depth', 'time']
DEBUG 2019-10-08 18:43:10,722Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214_10S_sci.nc
DEBUG 2019-10-08 18:43:10,726Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time
DEBUG 2019-10-08 18:43:10,734Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable oxygen
DEBUG 2019-10-08 18:43:10,736Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR
DEBUG 2019-10-08 18:43:10,737Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter
DEBUG 2019-10-08 18:43:10,739Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll
DEBUG 2019-10-08 18:43:10,740Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm
DEBUG 2019-10-08 18:43:10,742Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons
DEBUG 2019-10-08 18:43:10,743Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude
DEBUG 2019-10-08 18:43:10,745Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude
DEBUG 2019-10-08 18:43:10,751Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth
DEBUG 2019-10-08 18:43:10,753Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata
INFO 2019-10-08 18:43:10,889Z lrauvNc4ToNetcdf.py processResampleNc4File():1098 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214_10S_sci.nc