INFO 2019-10-08 18:30:01,740Z lrauvNc4ToNetcdf.py processResampleNc4File():959 Reading /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 file... INFO 2019-10-08 18:30:01,740Z lrauvNc4ToNetcdf.py processResampleNc4File():960 After copying to /tmp/201908292209_201908292214.nc4 INFO 2019-10-08 18:30:03,026Z lrauvNc4ToNetcdf.py processResampleNc4File():962 Read file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 INFO 2019-10-08 18:30:03,496Z lrauvNc4ToNetcdf.py processResampleNc4File():967 Creating t variable of the time indexes INFO 2019-10-08 18:30:03,505Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen INFO 2019-10-08 18:30:03,510Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2019-10-08 18:30:03,512Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Variable sea_water_salinity empty so skipping INFO 2019-10-08 18:30:03,514Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Variable sea_water_temperature empty so skipping WARNING 2019-10-08 18:30:03,514Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_salinity' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 WARNING 2019-10-08 18:30:03,514Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'sea_water_temperature' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 INFO 2019-10-08 18:30:03,521Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle WARNING 2019-10-08 18:30:03,521Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mole_concentration_of_nitrate_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 INFO 2019-10-08 18:30:03,527Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2019-10-08 18:30:03,533Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2019-10-08 18:30:03,538Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2019-10-08 18:30:03,543Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2019-10-08 18:30:03,562Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2019-10-08 18:30:03,568Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2019-10-08 18:30:03,573Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate WARNING 2019-10-08 18:30:03,574Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'mass_concentration_of_chlorophyll_in_sea_water' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 WARNING 2019-10-08 18:30:03,574Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output470' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 WARNING 2019-10-08 18:30:03,574Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'Output650' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 INFO 2019-10-08 18:30:03,579Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter concentration_of_chromophoric_dissolved_organic_matter_in_sea_water renaming to chromophoric_dissolved_organic_matter INFO 2019-10-08 18:30:03,584Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2019-10-08 18:30:03,586Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Variable BackscatteringCoeff700nm empty so skipping INFO 2019-10-08 18:30:03,591Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter VolumeScatCoeff117deg700nm renaming to VolumeScatCoeff117deg700nm INFO 2019-10-08 18:30:03,597Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group WetLabsSeaOWL_UV_A parameter mass_concentration_of_petroleum_hydrocarbons_in_sea_water renaming to petroleum_hydrocarbons INFO 2019-10-08 18:30:03,599Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Variable fix_residual_percent_distance_traveled empty so skipping INFO 2019-10-08 18:30:03,612Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter longitude renaming to pose_longitude_DeadReckonUsingMultipleVelocitySources INFO 2019-10-08 18:30:03,624Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter latitude renaming to pose_latitude_DeadReckonUsingMultipleVelocitySources INFO 2019-10-08 18:30:03,637Z lrauvNc4ToNetcdf.py processResampleNc4File():1042 Found in group DeadReckonUsingMultipleVelocitySources parameter depth renaming to pose_depth_DeadReckonUsingMultipleVelocitySources WARNING 2019-10-08 18:30:03,638Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'fix_residual_percent_distance_traveled' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 WARNING 2019-10-08 18:30:03,638Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'longitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 WARNING 2019-10-08 18:30:03,638Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'latitude' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 WARNING 2019-10-08 18:30:03,638Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'depth' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 INFO 2019-10-08 18:30:03,643Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Variable platform_battery_charge empty so skipping INFO 2019-10-08 18:30:03,646Z lrauvNc4ToNetcdf.py processResampleNc4File():1005 Variable platform_battery_voltage empty so skipping WARNING 2019-10-08 18:30:03,647Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 'platform_average_current' not in /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 DEBUG 2019-10-08 18:30:03,683Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for pitch DEBUG 2019-10-08 18:30:03,687Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for pitch INFO 2019-10-08 18:30:03,688Z lrauvNc4ToNetcdf.py createNav():472 platform_pitch_angle -> pitch: {'units': 'rad', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} DEBUG 2019-10-08 18:30:03,724Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for roll DEBUG 2019-10-08 18:30:03,727Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for roll INFO 2019-10-08 18:30:03,728Z lrauvNc4ToNetcdf.py createNav():472 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} DEBUG 2019-10-08 18:30:03,763Z lrauvNc4ToNetcdf.py createNav():460 calling ts.resample() for yaw DEBUG 2019-10-08 18:30:03,767Z lrauvNc4ToNetcdf.py createNav():462 calling self.interpolate() for yaw INFO 2019-10-08 18:30:03,768Z lrauvNc4ToNetcdf.py createNav():472 platform_orientation -> yaw: {'units': 'rad', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2019-10-08 18:30:03,769Z lrauvNc4ToNetcdf.py nudge_coords():592 /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214.nc4 DEBUG 2019-10-08 18:30:03,808Z lrauvNc4ToNetcdf.py var_series():580 longitude: rad_to_deg = True DEBUG 2019-10-08 18:30:03,845Z lrauvNc4ToNetcdf.py var_series():580 latitude: rad_to_deg = True DEBUG 2019-10-08 18:30:03,878Z lrauvNc4ToNetcdf.py var_series():580 longitude_fix: rad_to_deg = False DEBUG 2019-10-08 18:30:03,910Z lrauvNc4ToNetcdf.py var_series():580 latitude_fix: rad_to_deg = False INFO 2019-10-08 18:30:03,910Z lrauvNc4ToNetcdf.py nudge_coords():610 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) INFO 2019-10-08 18:30:03,912Z lrauvNc4ToNetcdf.py nudge_coords():626 - - - 0 0.00 - - INFO 2019-10-08 18:30:03,914Z lrauvNc4ToNetcdf.py nudge_coords():648 0: 0.371 0.0001297 0.0000165 147 1.26 -2.39 2.42 INFO 2019-10-08 18:30:03,920Z lrauvNc4ToNetcdf.py nudge_coords():678 2: - - - 223 1.70 - - INFO 2019-10-08 18:30:03,920Z lrauvNc4ToNetcdf.py nudge_coords():682 Points in final series = 370 DEBUG 2019-10-08 18:30:03,921Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():508 Constructing trackingdb url to 3600 seconds beyond time range of file INFO 2019-10-08 18:30:03,934Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():516 http://odss.mbari.org/trackingdb/position/whoidhs_ac/between/20190829T210940/20190829T231441/data.csv INFO 2019-10-08 18:30:03,958Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():539 Found 0 position values from the Tracking database INFO 2019-10-08 18:30:03,962Z lrauvNc4ToNetcdf.py processResampleNc4File():1095 ['oxygen', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'fix_time', 'fix_latitude', 'fix_longitude', 'PAR', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'chromophoric_dissolved_organic_matter', 'chlorophyll', 'VolumeScatCoeff117deg700nm', 'petroleum_hydrocarbons', 'pose_longitude_DeadReckonUsingMultipleVelocitySources', 'pose_latitude_DeadReckonUsingMultipleVelocitySources', 'pose_depth_DeadReckonUsingMultipleVelocitySources', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] DEBUG 2019-10-08 18:30:03,963Z lrauvNc4ToNetcdf.py write_netcdf():120 Creating netCDF file /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214_2S_scieng.nc DEBUG 2019-10-08 18:30:03,967Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable fix_time DEBUG 2019-10-08 18:30:03,977Z lrauvNc4ToNetcdf.py write_netcdf():144 Adding in record variable time DEBUG 2019-10-08 18:30:03,981Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable oxygen DEBUG 2019-10-08 18:30:03,985Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_buoyancy_position DEBUG 2019-10-08 18:30:03,989Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_elevator_angle DEBUG 2019-10-08 18:30:03,993Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_mass_position DEBUG 2019-10-08 18:30:03,997Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_latitude DEBUG 2019-10-08 18:30:04,002Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable fix_longitude DEBUG 2019-10-08 18:30:04,006Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable PAR DEBUG 2019-10-08 18:30:04,014Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_rudder_angle DEBUG 2019-10-08 18:30:04,019Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable control_inputs_propeller_rotation_rate DEBUG 2019-10-08 18:30:04,023Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chromophoric_dissolved_organic_matter DEBUG 2019-10-08 18:30:04,028Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable chlorophyll DEBUG 2019-10-08 18:30:04,036Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable VolumeScatCoeff117deg700nm DEBUG 2019-10-08 18:30:04,040Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable petroleum_hydrocarbons DEBUG 2019-10-08 18:30:04,044Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_longitude_DeadReckonUsingMultipleVelocitySources DEBUG 2019-10-08 18:30:04,048Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_latitude_DeadReckonUsingMultipleVelocitySources DEBUG 2019-10-08 18:30:04,052Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pose_depth_DeadReckonUsingMultipleVelocitySources DEBUG 2019-10-08 18:30:04,056Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable pitch DEBUG 2019-10-08 18:30:04,060Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable roll DEBUG 2019-10-08 18:30:04,064Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable yaw DEBUG 2019-10-08 18:30:04,068Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable latitude DEBUG 2019-10-08 18:30:04,072Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable longitude DEBUG 2019-10-08 18:30:04,076Z lrauvNc4ToNetcdf.py write_netcdf():156 Adding in record variable depth DEBUG 2019-10-08 18:30:04,080Z lrauvNc4ToNetcdf.py write_netcdf():163 Adding in global metadata INFO 2019-10-08 18:30:04,240Z lrauvNc4ToNetcdf.py processResampleNc4File():1098 Wrote /mbari/LRAUV/whoidhs/missionlogs/2019/20190824_20190830/20190829T220928/201908292209_201908292214_2S_scieng.nc